Genome Assembly Tools and Software - PART1 !!
The genome assemblers generally take a file of short sequ...embly & Analysis DNA Sequence Assembler is revolutionary bioinformatics software fo...SCARF is a next-gen sequence assembly tool for evolutionary genomics. Designed especia...2678 days ago
Phylogenetic & Molecular Genetics Terms and Definitions
analog -- A feature that appears similar in...rchical system that ideally reflects evolutionary history. cDNA -- Compleme...ter, and to have arisen later in the evolution of the clade. For example, "p...hind this pattern. phylogeny -- The evolutionary relationships among organi...2454 days ago
List of visualization tools for network biology
Network analysis is any structured technique used to mathematically analyze a c...tion networks across species to infer protein complexes that are conserved in evolution http://www.cs.tau.ac.il/~bne...2281 days ago
Computational resources for TE discovery and TE detection
Transposable Elements (TEs) to genome structure and evolution as well as their impact on genome sequencing, assembly, annotati...sp; find_ltr http://darwin.informatics.indiana.edu/cgi-bin/evolution/ltr.pl FINDMITE http:/...2266 days ago
Some useful Bioinformatics links
Reference-free prediction of rearrangement breakpoint re...article/30/15/2210/2391162 Genome Architecture and Evolution of a Unichromosomal Asexual N...p://db-mml.sjtu.edu.cn/ICEberg/index.php Satsuma - Evolution and Genomics http://evomics....2234 days ago
Tools to Predict the Impact of Missense Variants !
Prioritizing missense variants for further experimental investigation is a key chall...rvation or acceleration P values based on an alignment and a model of neutral evolution” FatHMM unweighted (Fa...2196 days ago
Ancestral sequence reconstruction steps !
Ancestral sequence reconstruction (ASR) – also...is a technique used in the study of molecular evolution. The method consists of the s...y to reveal the mechanisms and dynamics of protein evolution. BEAST is the...2171 days ago