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Public Databases for Bioinformatics !
...f.writeable_obj.write( data ) self.writeable_obj.flush() self.lock.release() return def close( self ): self.writeable_obj.close() def worker(queue, ofp):...1148 days ago
Resolving the complexity of the human genome using single-molecule sequencing
...rly understood ten years after its completion. The results in this paper https://www.genomeweb.com/sequencing/team-uses-single-molecule-sequencing-close-gaps-chart-complexity-human-r...3229 days ago
- ...t should be less fragmented and with total size smaller than the input contigs. In addition, Redundans will automatically close the gaps resulting from...
2812 days ago
- ABACAS is intended to rapidly contiguate (align, order, orientate) , visualize and design primers to close gaps on shotgun assembled contigs based on a reference sequence. It uses MU...
2643 days ago
A Post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
...S, that is able to contiguate contigs from a de novo assembly against a closely related reference. IMAGE,...ng gaps in assembled genomes using mate pair information. It is able to close gaps left open by the assembl...2559 days ago
- ...ded finishingContigs from a shotgun assembly are typically linked together in a graph structure that can serve to guide finishing and in some case close gaps in-silico. Also, in...
2550 days ago
- ...prove resolution of the visualization fron n to √nn; easy to visualize clusters because generally data points in the axis will also be close in the 2D space. This pack...
2066 days ago
CSBFinder: Discovery of colinear syntenic blocks across thousands of prokaryotic genomes
...for the discovery, ranking, and taxonomic distribution analysis of colinear syntenic blocks (CSBs) - groups of genes that are consistently located close to each other, in the same or...2028 days ago
BAUM – Improving Genome Assembly by Adaptive Unique Mapping and Local Overlap-Layout-Consensus
...apping; then the local OLC is used to assemble each region in parallel. BAUM can: (1) perform reference-assisted assembly based on the genome of a close species; (2) or improve the r...2028 days ago
QUAST-LG: Versatile genome assembly evaluation
...assembly for a given genome and set of reads, and compute theoretical limits on assembly correctness and completeness. Using QUAST-LG, we show how close the assemblies are to the the...2028 days ago
