Results for "dRAD and ddRAD sequencing"
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OPERA : Optimal Paired-End Read Assembler
OPERA (Optimal Paired-End Read Assembler) is a sequence assembl...mate-pair/long reads to order and orient the intermediate conti...ors, improve efficiency etc.) and incorporated features that ar...ore encourage you to download and u...g-reads from third-generation sequencing technologies (PacBio or Oxfor...2808 days ago
- These tutorials are written for hundreds of bioinformaticians t...rge volume of next-generation sequencing (NGS) data. NGS techno...y writing a joint white-paper and petitioning to various government agencies. The tasks of sequencing and assembly were handled by dedicated s...
2812 days ago
GAGE : Genome Assembly Gold-standard Evaluation
GAGE is an evaluation of the very latest large-scale genome assembly algorithms. We h...ware in a rapidly changing field of next-generation seque...sp;GAGE: A critical evaluation of genome assemblies and assembly algorithms. http://genome....2810 days ago
- Development of cancer is driven by somatic alterations, including numerical and structural chromosomal aberra...associated chromosomal breaks and identify genes that appear no...or by (low-pass) whole genome seque...in R (www.cran.r-project.org) and is available from Bioconductor (www....
2166 days ago
- The MIRO (the miRNA omics) pipeline is a flexible and powerful tool for the analysi...ression using short-read deep sequencing data. In its present i...e (miRNA) expression profiles and cluster reads using one of several a...tware such as genome browsers and miRDeep.
2782 days ago
- ...contain hundreds or even thousands of species. One of the main...requisite for genome assembly and for analysis of the biologica...enomics easier, by making the sequencing process faster, and more difficult, by producing shorter...ines analysis from both Phymm and BLAST, produces even higher acc...
2777 days ago
- ...genomic revolution to inspect and understand variants, expression patterns...ignments along both reference and query sequences, along with a...n these two genes. After SMRT sequencing, Ribbon shows that there are...b sequence deleted from chr19 and inserted into chr16 (Figure 1b). Thu...
2766 days ago
- Background: Transcriptomics, metabolomics, metagenomics, and other various next-generation sequencing (-omics) fields are kno...ored grid of cells, efficiency and speed have often proven to be...ible on both desktop computers and w...methods are implemented in R, and are available as part of the shinyhe...
2766 days ago
- ART is a set of simulation tools to generate synthetic next-generation sequencing reads. ART simulates seque...or commercial next-generation sequencing platforms: Illumina's Solexa, Roche's 454 and Applied Biosystems' SOLiD. ART can b...
2753 days ago
- HybPiper was designed for targeted sequence capture, in which DNA sequencing libraries are enriched...e starts with high-throughput seque...ample for each target region, and a separate file with the translated...ative paralogs, and calculate sequencing depth. For more information,&...
2752 days ago
