Comment on "Run miniasm assembler on nanopore reads !"
I followed this to assemble the genome using ONT (nanopore reads) Minimap and miniasm are ultrafast tools for (i) mapping and (ii) assembly. Designed for long, noisy rea...2190 days ago
Comment on "List of genome announcement, notes and reporting journals"
Genomics data also accept draft genome assembly papers https://www.sciencedirect.com/journal/genomics-data2197 days ago
Comment on "GraphMap - A highly sensitive and accurate mapper for long, error-prone reads"
urbe@urbo214b[genome] graphmap align -h []GraphMap - A very accurate and sensitive lo...or FASTA files. fasta - Loads FASTQ or FASTA files. gfa - Graphical Fragment Assembly format. sam - Sequence Alignm...2307 days ago
2359 days ago
2588 days ago
Comment on "Genome Assembly Tutorial"
This totorial is also very informative http://www.imperial.ac.uk/bioinformatics-data-science-group/resources/software/next-generation-sequencing-ngs-software/de-novo-assembly/2708 days ago
Comment on "Structural variation: the hidden genomic treasure"
I like this tool GRIDSS: the genomic rearrangement identification software suite...calls variants based on alignment-guided positional de Bruijn graph break-end assembly, split read, and read pair ev...2718 days ago
Comment on "SGA: String Graph Assembler"
Try this hierarchical genome assembly (HGA) assembler https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4779561/2720 days ago
Comment on "RACA: Reference-Assisted Chromosome Assembly"
Chromosomer – a reference-based genome arrangement tool, which rapidly builds c...r of auxiliary tools that implement common operations accompanying the genome assembly process. More at http:/...2786 days ago
2814 days ago