BOL: Results for "delta"

Results for "delta"

- Jit@jit.aber
Delta: a new Web-based 3D genome visualization and analysis platform
Delta is an integrative visualization and analysis platform to facilitate visually annotating and exploring the 3D physical architecture of genomes. Delta takes Hi-C or ChIA-PET contact matrix as input and predicts the topologically associating domains and chromatin loops in the ge...
Tags: Delta, Web-based, 3D, genome, visualization, analysis, platform
2326 days ago
- Jit@jit.aber
assemblytics: delta file to analyze alignments of an assembly to another assembly or a reference genome
Download and install MUMmer Align your assembly to a reference genome using nucmer (from MUMmer package) $ nucmer -maxmatch -l 100 -c 500 REFERENCE.fa ASSEMBLY.fa -prefix OUT Consult the MUMmer manual if you encounter problems Optional: Gzip the delta file to speed up upload (usually 2-4X f...
Tags: assemblytics, delta, analyze, alignment, assembly, reference, genome, visualization
2150 days ago