Results for "discordant reads"
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ART is a set of simulation tools to generate...thetic next-generation sequencing reads. ART simulates sequencing reads by mimicking real sequencing...ncing data. ART can also simulate reads using user own read error mod...t in read simulation. ART outputs reads in the FASTQ format, and alig...2738 days ago
- HybPiper was designed for targeted sequence capt...s from high-throughput DNA sequencing reads. Targeted bait capture is a...tarts with high-throughput sequencing reads (for example from Illumina Mi...sample (single or paired-end sequence reads). When HybPiper generates seq...
2737 days ago
- LINKS is a genomics application for scaffolding genome assemblies with long reads, such as those produced by Ox...genome assemblies with any long sequences (eg. ONT reads, PacBio reads, another draft...
2737 days ago
Maq: Mapping and Assembly with Quality
Maq stands for Mapping and Assembly with Quality It builds assembly by mapping short reads to reference sequences. Maq i...Simulate diploid reference and read sequences, map reads, call variants and evaluate t...2719 days ago
- Background. Next-generation sequencing technologies are now producing multiple times the genome size in total reads from a single experiment. Thi...g., mutants of the same species) directly from the reads used in the experiment. Our a...
2716 days ago
- HGA tool version 1.0 This tool helps to apply the Hierarchical Genome Assembly (HGA) method. The tool will apply: 1. Partitioning a given reads dataset into a given number o...
2712 days ago
- EXCAVATOR2 is a collection of bash, R and Fortran scripts and codes that analyses Whole...ing targeted exons by integrating the analysis of In-targets and Off- targets reads. Specifically, it improves th...
2711 days ago
- Bipype is a very useful program, which prepare a lot of types...then bipype finds the SA coordinates of the input reads and generates alignments in the SAM format given single-end reads, aligns reads to reference se...
2710 days ago
- Minia is a short-read assembler based on a de Bruijn graph, capable of assembling a huma...se) For the impatient A typical Minia command line looks like: ./minia -in reads.fa -kmer-size 31 -abundance-m...
2703 days ago
- SGA is a de novo genome assembler based on the concept of string graphs. The major goal...cient, which is achieved by using a compressed representation of DNA sequence reads. More at https://github.com...
2703 days ago
