3019 days ago
2928 days ago
2888 days ago
2796 days ago
FSA: Fast Statistical Alignment
...is a probabilistic multiple sequence alignment algorithm which uses a "distance-based" approach to aligning homologous protein, RNA or DNA sequences. Much as distance-based phylogenetic reconstruc...2659 days ago
DAGchainer: Computing Chains of Syntenic Genes in Complete Genomes
...Gchainer accepts a list of gene pairs with sequence homology along with their genome coordinates. Using a scoring function which accounts for the distance between neighboring genes on...2647 days ago
2571 days ago
GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies.
...diverse information sources. GRASS offers a mixed-integer programming formulation of the contig scaffolding problem, which combines contig order, distance and orientation in a single o...2553 days ago
2476 days ago
2476 days ago