Results for "fasta"
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Maq: Mapping and Assembly with Quality
...reviously known as mapass2. Run Maq Now Follow these steps to try Maq. All you need is a reference sequence file in the FASTA format. Prepare a reference sequence (ref.fasta). Better a bacterial genome....2718 days ago
- ...atch files are stored. These are .sam files produced after mapping reads to contigs and the resulting scaffolds file `scaffolds.fa` fasta file; -c) Contig fasta file; -m) Command lin...
2697 days ago
MeGAMerge: A tool to merge assembled contigs, long reads from metagenomic sequencing runs
...ge is a perl based wrapper/tool that can accept any number of sequence (FASTA) files containing assembled contigs of any length in Multi-FASTA format to produce an improved...2691 days ago
PBSuite: Software for Long-Read Sequencing Data from PacBio
....1371%2Fjournal.pone.0047768PBJelly is a highly automated pipeline that aligns long sequencing reads (such as PacBio RS reads or long 454 reads in fasta format) to high-confidence dr...2621 days ago
splitbam: splits a BAM by chromosomes
...so be added to those empty BAMs to avoid some tools (like samtools) to crash. Usage java -jar splitbam.jar -p OUT/__CHROM__/__CHROM__.bam -R ref.fasta (bam|sam|stdin) Options -...2620 days ago
- ...variety of formats) much each correspond to a single population, with variants called relative to a single reference sequence (one sequence in one FASTA file). Just run the main scri...
2590 days ago
WGS Celera Assembler version 8.3rc2
...xrwxr-x 1 urbe urbe 224K Apr 10 11:41 asmOutputFasta-rwxrwxr-x 1 urbe urbe 448K Ap...wxrwxr-x 1 urbe urbe 9,8K Apr 10 11:41 convert-fasta-to-v2.pl-rwxrwxr-x 1 urbe urb...xrwxr-x 1 urbe urbe 854 Apr 10 11:41 utg2fasta-rwxrwxr-x 1 urbe urbe 731K Ap...2580 days ago
- ...ith a single ASCII character for brevity. It was originally developed at the Wellcome Trust Sanger Institute to bundle a FASTA sequence and its quality...
2557 days ago
- ...olds. Currently we offer this as a command-line tool in Perl. The input data is given by pre-assembled contig sequences (FASTA) and NGS paired-read data (Illumina/454/Solid FASTA or FASTQ). The final scaffold...
2554 days ago
Grinder / Biogrinder - A versatile omics shotgun and amplicon sequencing read simulator
...der is a versatile program to create random shotgun and amplicon sequence libraries based on DNA, RNA or proteic reference sequences provided in a FASTA file. Grinder can produce g...2535 days ago
