BOL

Results for "fastq"

Tags

• • Jit@jit.aber

  

  #Convert #FASTQ to FASTA and set bases of #quality lower than 20 to N $ seqtk seq -aQ64 -q20 -n N IN.fastq > OUT.fasta

  Tags: Convert, FASTQ, quality

  993 days ago

• • Abhimanyu Singh@abhimanyu

  

  fastq to fasta convertor $ sed -n '1~4s/^@/>/p;2~4p' test.fastq > test.fasta #Convert #Fasta #Fastq #fa #fq

  Tags: Convert, Fasta, Fastq, fa, fq

  2555 days ago

• • Jit@jit.aber

  

  Get the reads in fastq file: awk '{s++}END{print s/4}' file.fastq #reads #count #ngs #fastq

  Tags: reads, count, ngs, fastq

  2374 days ago

• • Jit@jit.aber

  

  Fastq 2 fasta. $ sed -n '1~4s/^@/>/p;2~4p' test.fastq > test.fasta #fastq #fasta #convert

  Tags: fastq, fasta, convert

  2359 days ago

• • Poonam Mahapatra@poonam

  

  Convert interleaved to separate files with BBmap. $ reformat.sh in=reads.fq out1=reads_r1.fq out2=reads_r2.fq #interleave #fastq #seperate #reformat #bbmap

  Tags: interleave, fastq, seperate, reformat, bbmap

  2318 days ago

• • Jit@jit.aber

  

  interleave fastq files https://gist.github.com/nathanhaigh/4544979 #interleave #fastq #pair #ngs #reads

  Tags: interleave, fastq, pair, ngs, reads

  2314 days ago

• • Jit@jit.aber

  

  fastq-pair: Match up paired end fastq files quickly and efficiently https://github.com/linsalrob/fastq-pair #fastq-pair #fastq

  Tags: fastq, fastq

  1836 days ago