2637 days ago
2637 days ago
YASRA: Reference based assembler
YASRA (Yet Another Short Read Assembler) performs comparative assembly of short rea...erence genome, which can differ substantially from the genome being sequenced. Mapping reads to reference genomes ma...2624 days ago
SeqMule: Automated human exome/genome variants detection
SeqMule takes single-end or paird-end FASTQ or BAM files, generates a script consisting of more than 10 popular a...lysis tools and runs the script line by line. Users can change the pipeline or fine-tu...2618 days ago
Metagenomics assembly workshop !!
Welcome to the one-day metagenomics assembly workshop. This tutorial will gui...BA-UD Assembly Ray Assembly Gene Prediction Assembly Evaluation Read Mapping MetaQUAST Binning Ma...2576 days ago
2562 days ago
A Post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
PAGIT addresses the need for software to generate high quality draft genomes. It is..., that enables errors in the consensus sequence to be corrected by iteratively mapping reads to the current assembly...2552 days ago
CAR: Reconstructing Contiguous Regions of an Ancestral Genome
We describe a new method for predicting the ancestral order and orientation of th...he available human genome sequence data. The precision is further increased by mapping inversions as small as 31 bp....2546 days ago
2544 days ago
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
GraphMap - A highly sensitive and accurate...s11307.htmlFeatures Mapping position agnostic to alignmen...E-value. Meaningful mapping quality. Va...mbly. Transcriptome mapping through internal construction...2526 days ago