Decoding SAM flags
This utility makes it easy to identify what are the properties of a read based on its SAM flag value, or conversely, to find what the SAM Flag value would...
...H. If using BLAST, add blastall and formatdb.
Edit permute.sh to your liking, paying particular attention to the kmer, cvCut, expCov, and other flags
To Run:
perl fastaAllSize...