BOL: Results for "gaps"

Results for "gaps"

- Jit@jit.aber
Comment on "AfterQC: Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data"
...NA reads, transcript-annotated reads, strand specificity), coverage (like mean coverage, mean coefficient of variation, 5’/3’ coverage, gaps in coverage, GC bias) and exp...
2146 days ago
- Jit@jit.aber
Comment on "Basic command-line to run BLAST"
..._vaga.v2.pep.fa -db mouse.protein.fa -out seeHumAvagaAln2_mouse.tab -evalue 1e-20 -outfmt '6 qseqid qlen qstart qend sseqid slen sstart send pident gaps evalue length frames qcovs bi...
2253 days ago
- Jit@jit.aber
Comment on "GraphMap - A highly sensitive and accurate mapper for long, error-prone reads"
...should be used for alignment. Options are: sg - Myers' bit-vector approach. Semiglobal. Edit dist. alignment. sggotoh - Gotoh alignment with affine gaps. Semiglobal. anchor - anchore...
2301 days ago
- Jit@jit.aber
Comment on "Platanus"
.... Finally, paired-end reads localized on gaps in scaffolds are assembled and gaps are closed. ***** REQUIR...: assembled sequences that include gaps('N's mean gaps) PREFIX...Smaller INT increase the number of gaps closed (Ex. -v 20). -e...
2807 days ago