Modular, efficient and constant-memory single-cell RNA-seq preprocessing
With kallisto | bustools you can Generate a cell x gene or cell x transcript equivalence class count...erturb-seq. Obtain QC reports from single-cell RNA-seq data The kall...lar and efficient pre-processing of single-cell...1126 days ago
2635 days ago
Strand Life Sciences announces the release of Strand NGS v3.1 at ASHG 2017
Strand Life Sciences announces the release of Strand NGS v3.1 at ASHG 2017 ORLAN...the Annual Meeting of the American Society of Human Genetics today. Two major th...e-scale and UMI support can be used in single-cell-based studies that reveal tumor-cell...2386 days ago
SeqMule: Automated human exome/genome variants detection
SeqMule takes single-end or paird-end FASTQ or BAM files, generates a script consisting of more than 10 popular alignment, analysis tools and runs the script line by l...2616 days ago
ChromHMM: Chromatin state discovery and characterization
ChromHMM is software for learning and characterizing chromatin states. ChromHMM can integrate multiple chromatin d...lting model can then be used to systematically annotate a genome in one or more cell...2573 days ago
CABOG: Celera Assembler with Best Overlap Graph
CABOG (Celera Assembler with Best Overlap Graph) is scientific software f...e 2001 publication of the first draft human genome sequence. The software...irst to assemble the genome of a multicellular organism (Drosophila mela...emble both parental haplotypes of one human...2547 days ago
CAR: Reconstructing Contiguous Regions of an Ancestral Genome
We describe a new method for predicting the ancestral order and orientation...that accounts for 96.8% of the available human genome sequence data. The pre...predicted evolutionary breakpoints in the huma...e genome sequence of the last ancestor of human...2544 days ago
AVID: A Global Alignment Program
A new global alignment method called AVID. The method is designed to be fast, memory effici...mparison of assemblies to alignment of large syntenic genomic regions and whole genome human...2538 days ago
GeneProf: analysis of high-throughput sequencing experiment
GeneProf is a web-based, graphical software suite that allows users to analyse data produced using high-throughput...ped at the Centre for Regenerative Medicine / Institute for Stem Cell...2496 days ago
Computational Genomics: Applied Comparative Genomics
The primary goal of the course is for students to be grounded in theory and leave the course empowered to cond...lyzing genomes starting from raw sequencing data. The course will focus on human genomics and human...2349 days ago