LoRDEC: a hybrid error correction program for long, PacBio reads
...rror rate is assumed to be small, and the PacBio read set, which is then corrected using the reference set. Typically, the reference set contains Illumina reads. Usually, errors in P...2575 days ago
2552 days ago
2550 days ago
CLA: Contig-Layout-Authenticator
To improve upon the shortcomings associated with the construction of draft genomes with Illumina paired-end sequencing, we developed Contig-Layout-Authenticator (CLA). The CLA pipeline...2550 days ago
GAM-NGS: genomic assemblies merger for next generation sequencing
...order to improve contiguity and correctness. It can be used on all NGS-based assembly projects and it shows its full potential with multi-library Illumina-based projects. With more tha...2535 days ago
Pollux: platform independent error correction of single and mixed genomes
...ux: General-purpose error corrector that corrects errors introduced by Illumina, Ion Torrent, and Roche 454 s...s of sequencing projects. Using published data sets, we correct 94% of Illumina MiSeq errors, 88% of Ion Torr...2535 days ago
GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies.
...re and an unconstrained binary quadratic programming approximation of the original problem. We compared GRASS with existing HTS scaffolders using Illumina paired reads of three bacteri...2532 days ago
Grinder / Biogrinder - A versatile omics shotgun and amplicon sequencing read simulator
...nscriptomic, metatranscriptomic, proteomic, metaproteomic shotgun and amplicon datasets from current sequencing technologies such as Sanger, 454, Illumina. These simulated datasets can...2530 days ago
Omega2: metagenome assembly pipeline
...using a fraction of the computing time of existing overlap-layout-consensus assemblers. This indicates Omega can more efficiently assemble longer Illumina reads, and at deeper coverage...2484 days ago
2483 days ago