Results for "long"
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Bioinformatics software for biologists in the genomics era
...s between the user-friendly software needed and the scripting/programming infrastructure often employed for the analysis of large numbers of genes, long genomic segments and groups o...3783 days ago
Orione – a web-based framework for NGS analysis in microbiology
End-to-end NGS microbiology data analysis requires a diversity of tools covering bacterial resequencing, de novo assembly, scaffolding, bacterial RNA-Seq, gene annotat...3570 days ago
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
GraphMap is a novel mapper targeted at aligning long, error-prone third-generation sequencing data.It is designed to handle Oxford Nanopore MinION 1d and 2d reads with very...3221 days ago
QUAST: quality assessment tool for genome assemblies
...for comparison. More at http://bioinf.spbau.ru/quast http://bioinformatics.oxfordjournals.org/content/early/2013/03/09/bioinformatics.btt086.long2947 days ago
Trimmomatic: A flexible read trimming tool for Illumina NGS data
...ead with a 4-base wide sliding window, cutting when the average quality per base drops below 15 (SLIDINGWINDOW:4:15) Drop reads below the 36 bases long (MINLEN:36) More at http:/...2939 days ago
- Platanus is a novel de novo sequence assembler that can reconstruct genomic sequences of highly heterozygous diploids from massively parallel shotgun sequencing data....
2911 days ago
SATSUMA : Highly sensitive whole-genome synteny alignments.
Satsuma is a whole-genome synteny alignment program. It takes two genomes, computes alignments, and then keeps only the parts that are orthologous, i.e. following the...2911 days ago
- LoRMA is a tool for correcting sequencing errors in long reads such those produced by Pacific Biosciences s.... Walve, E. Rivals, and E. Ukkonen: Accurate selfcorrection of errors in long reads using de Bruijn graphs....
2162 days ago
OPERA : Optimal Paired-End Read Assembler
.... It uses information from paired-end/mate-pair/long reads to order and orient the...nformation provided by the paired-end/mate-pair/long reads (for further details se...atest release contains the wrapper script OPERA-long-read that enables scaffolding...2792 days ago
- ...for classifying sequences as short as 100 base pairs (bp) have until now been relatively inaccurate, requiring metagenomics projects to use older, long-read technologies. Phymm...
2760 days ago
