Results for "micro RNA"
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The MIRO (the miRNA omics) pipeline is a flexible and powerful tool for the analysis of miRNA (or more generall short RNA) expression using short-read...ifferent mappers, create differential gene (miRNA) expression profiles and clus...2770 days ago
- Motif based sequence analysis suits The MEME Suite allows the biologist to dis...her motif-based analyses. The MEME Suite supports motif-based analysis of DNA, RNA and protein sequences. It pro...
2691 days ago
Modular, efficient and constant-memory single-cell RNA-seq preprocessing
With kallisto | bustools you c...e class count matrix Perform RNA velocity and single-nuclei RNA-seq analsis Quantify data fr...Obtain QC reports from single-cell RNA-seq data The kallisto...ient pre-processing of single-cell RNA-seq, Nature Biotechnology (20...1127 days ago
FSA: Fast Statistical Alignment
FSA is a probabilistic multiple sequence alignment algorit...ance-based" approach to aligning homologous protein, RNA or DNA sequences. Much as dis...ailable only for small-scale analyses of proteins or RNAs to large-scale problems such...2646 days ago
Strand Life Sciences announces the release of Strand NGS v3.1 at ASHG 2017
Strand Life Sciences announces the release...Strand NGS now supports large scale RNA- and small-RNA-Seq and Unique Molecular Iden...GS). The first theme is large-scale RNA-Seq data analysis. Current cr...ular Identifiers, or UMIs, for DNA-, RNA- and small-RNA-Seq. UMI suppo...2387 days ago
Pacbio Long Reads Compatible Software and Tools
The following software packages are known to be compatible with PacBio® data, in...Variations Detection Reference-based alignment Consensus and variant calling RNA analysis Epigenetic base mod...2608 days ago
- NGS data are just a bunch of sequences, you have no idea which region in the genome e...ie for DNA-Seq data and Tophat, STAR or HISAT for RNA-Seq data. Mappers differ in w...
2561 days ago
Grinder / Biogrinder - A versatile omics shotgun and amplicon sequencing read simulator
Grinder is a versatile program to create random shotgun and amplicon sequence libraries based on DNA, RNA or proteic reference sequence...Grinder may also be used to help decide between alternative sequencing methods for a...2539 days ago
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
GraphMap - A highly sensitive and accurate mapper for long... Transcriptome mapping through internal construction of a transcript...elopment of a new spliced-alignment mode for mapping RNA-seq reads is under way.Descri...2525 days ago
- The Charm City Circleator--or Circleator for short--is a Perl-based visualization too...on values across multiple samples or timepoints. Visualizing coverage plots of RNA-Seq read alignments. Key F...
2506 days ago
