Results for "multiple fasta"
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Mauve is a system for constructing multiple genome alignments in the presence of large-scale...onary events such as rearrangement and inversion. Multiple genome alignments provide a b...s. Mauve has been developed with the idea that a multi...1983 days ago
- MCscan is a computer program that can simultaneously scan multiple genomes to identify homologous chromosomal regions and subsequently align these regions using genes as anchors. Th...
2703 days ago
- YAHA, a fast and flexible hash-based aligner. YAHA is as fast and accurate as BWA-SW at f...relevant breakpoint penalty. YAHA can also report multiple mappings per defined segment...s, and especially excels at complex SVs comprising multi...
2674 days ago
- BioDownloader is a program for downloading and/or updating files from ftp/http servers. The program has unique featur...oaded files (archive extraction, file conversion, etc.) capable of performing multi...
2638 days ago
Many-Core Engine (MCE) for Perl example
MCE spawns a pool of workers and therefore does not fork a new process per each element o...MCE::Flow is similar to MCE::Loop, but allows for multiple code blocks to run in paralle...an efficient parallel implementation for chaining multi...2663 days ago
- Our basic strategy in building homology maps is to use exons that are orthologous in multiple genomes as map "anchors." Given K genomes, the steps in the map construction are as follows: For e...
2657 days ago
FSA: Fast Statistical Alignment
FSA is a probabilistic multiple sequence alignment algorithm which uses a "...e divergence estimates, FSA builds a multiple alignment using only pairwise...nealing technique for constructing a multiple alignment from pairwise compa...to reduce the computational cost of multi...2657 days ago
DnaSP v5: a software for comprehensive analysis of DNA polymorphism data
DnaSP is a software package for a comprehensive analysis of DNA polymorphism data. Version 5 implements a number of n...Among other features, the newly implemented methods allow for: (i) analyses on multi...2657 days ago
- BRIG is a free cross-platform (Windows/Mac/Unix) application that can display circular comparisons between a large nu...pping files enabling genomic regions present in unassembled sequence data from multi...
2647 days ago
- This sockeye software uses the Ensembl database project to import sequence and annotation information from sever...ls. Ensembl-derived and imported sequences can be analyzed by using a suite of multi...
2646 days ago
