Results for "path"
Bio-Scripts
(JitMetaENV) ➜ JitMeta conda install grabseqs -c louiejtaylor -c bioconda -c conda-forge Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.1232 days ago
- ...ng Catalyst::Runtime Catalyst::Devel List::Util Test::XML::Simple Test::XPath IO::String Bio::Perl version # Set $PERL5LIB to find these libraries, and set $PATH to use this Perl instead of t...
2159 days ago
- ...y sequence in a folder # Directory of sequences $myDir = "/home/anjana/seqs"; # Output directory (relative to $myDir or full path) $outputDir = "OutDir"; # Path to pattern file $patFile = "...
2931 days ago
Perl script to Mutate a DNA Sequence
...in the same directory of this script, enter the file name with its full path. # Example: # In windows:...\rnafile.txt # In Linux : /home/user/sequence/rnafile.txt use File::Path; print "ENTER THE FILENAME...2931 days ago
Perl script to count the number of Adenine, Thymine, Guanine and Cytosine in your DNA Sequence
...ile name of the DNA sequence. If the sequence file is not available in the same directory of this script, enter the name of the file along with the path. In windows: c:\dnafile.t...2931 days ago
Perl script to find the absolute "full" path of the file !
#!/usr/bin/perl use Cwd; my $this_file_full_path = Cwd::abs_path(__FILE__); print "$this_file_full_path\n"; use Cwd qw/ realpath /; ## $0; this script my $path = realpath($0); print $path;2894 days ago
Install ATOM editor on Elemantory OS / Ubuntu
...tu1_amd64.deb ... Unpacking gconf-service (3.2.6-4ubuntu1) ... Setting up gconf2-common (3.2.6-4ubuntu1) ... Creating config file /etc/gconf/2/path with new version Setting up...1191 days ago
- ...sta_file; my $filter_length; GetOptions("fasta_file=s" => \$fasta_file, "length_filter=i" => \$filter_length); die "Usage: $0 [options] \t\t-f /path/to/fasta/file [Required] \t\...
2719 days ago
- #!/usr/local/bin/perl -w # NOTE: YOU MUST CHANGE THE LINE ABOVE TO POINT TO # THE FULL PATH OF THE PERL EXECUTABLE ON YOUR SYSTEM. # System requirements: requires perl and perl...
2708 days ago
Extract fasta sequence from a multifasta file with coordinates
...from a directory of Fasta files my $db = Bio::DB::Fasta->new('/path/to/fasta/files/'); my @ids...stuff } # Filehandle access my $fh = Bio::DB::Fasta->newFh('/path/to/fasta/files/'); while (...2547 days ago
