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Results for "phase"

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• • Jit@jit.aber

  

  Converting a VCF into a FASTA given some reference !

  Samtools/BCFtools (Heng Li) provides a Perl script vcfutils.pl which does this, the function vcf2fq (lines 469-528) This script has been modified by others to convert InDels as well, e.g. this by David Eccles ./vcf2fq.pl -f <input.fasta> <all-site.vcf> ...

  Tags: Convert, VCF, FASTA, reference, genome, assembly, phase

  2109 days ago

• • Jit@jit.aber

  

  CANU assembler FAQ https://canu.readthedocs.io/en/latest/faq.html #canu #faq #haploid #phase

  Tags: canu, faq, haploid, phase

  1943 days ago

• • Jit@jit.aber

  

  http://loupe.10xgenomics.com #10XGenomics #10X #Phase #Haplotype #View

  Tags: 10XGenomics, 10X, Phase, Haplotype, View

  2048 days ago

• • Jit@jit.aber

  

  pWhatsHap: a parallel, high-performance version of WhatsHap

  Given the potential relevance of efficient haplotyping in several analysis pipelines, we have designed and engineered pWhatsHap, a parallel, high-performance version of WhatsHap. pWhatsHap is embedded in a toolkit developed in Python and supports genomics datasets in standar...

  Tags: pWhatsHap, parallel, high-performance, WhatsHap, Phasing, Phase, Genome, Alles, Haplotype

  1992 days ago