2634 days ago
2617 days ago
CLA: Contig-Layout-Authenticator
...tasets. CLA is a user friendly tool that requires a single command line input to generate ordered scaffolds. Script https://sourceforge.net/projects/c-l-authenticator/files/2557 days ago
A Post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
PAGIT addresses the need for software to generate high quality draft genomes. It is based on a series of programs that we developed: ABACAS, that is able to contiguate...2549 days ago
CABOG: Celera Assembler with Best Overlap Graph
...ra Assembler with Best Overlap Graph) is scientific software for DNA research. CABOG has been a critical component of many genome sequencing projects. CABOG operates on small geno...2547 days ago
GAM-NGS: genomic assemblies merger for next generation sequencing
...e contiguity and correctness. It can be used on all NGS-based assembly projects and it shows its full potential with multi-library Illumina-based projects. With more than 20 available...2543 days ago
Pollux: platform independent error correction of single and mixed genomes
...stitution errors, we locate and correct insertion, deletion, and homopolymer errors while remaining sensitive to low coverage areas of sequencing projects. Using published data sets, w...2543 days ago
2541 days ago
SIMBA: a web tool for managing bacterial genome assembly generated by Ion PGM sequencing technology
SIMBA, SImple Manager for Bacterial Assemblies, is a Web interface for managing assembly projects of bacterial genomes. SIMBA was created to assist bioinformaticians to assemble bacter...2539 days ago
DIYA: a bacterial annotation pipeline for any genomics lab
DIY Genomics is an open source bioinformatics consortium intended to bring a collection of tools and libraries into the hands of small scale genomics labs for the process of sequence assembly and annotation. Projects include DIYA, MGAP, CRISPR, and DIYGV http://gmod.org/wiki/Diya2501 days ago