Results for "read depth"
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IMPUTE2 is a computer program for phasing observed genotypes and imputing missing...load package. Once you have done this, you will be ready to try some example analyses...m can perform a function that isn't listed, you can read...2742 days ago
- ART is a set of simulation tools to generate synthetic next-generation sequencing reads. ART simulates sequencing reads by mimicking real sequencing process...equencing data. ART can also simulate reads using user own read error mo...n sequencing data analysis, including read...
2735 days ago
- ...rom high-throughput DNA sequencing reads. Targeted bait capture is a...ts with high-throughput sequencing reads (for example from Illumina M...paralogs, and calculate sequencing depth. For more information, ...ple (single or paired-end sequence reads). When HybPiper generates seq...
2734 days ago
Maq: Mapping and Assembly with Quality
Maq stands for Mapping and Assembly with Quality It builds assembly by mapping short reads to reference sequences. Maq...the same directory. Simulate diploid reference and read...2716 days ago
- Minia is a short-read assembler based on a de Bruijn graph, capable of assembling a human genome on a desktop comp...base) For the impatient A typical Minia command line looks like: ./minia -in reads...
2700 days ago
- fqtools is a software suite for fast processing of FASTQ files. Various file manipulations are supp...pair of files as input. If no input file is specified, fqtools will attempt to read...
2700 days ago
- PRISM is a software for split read (reads which span across a structrual variant -- SV ) ma...ndom duplications with the direction of discordant read pairs. PRISM_CTX is a tool fo...itional information is available in the PRISM READM...
2698 days ago
- caffMatch is a novel scaffolding tool based on Maximum-Weight Ma...lity scaffolds from NGS data (reads and contigs). The tool is wr...n case one needs to first map reads to contigs (instead of provi...files produced after mapping reads to contigs and the resulting...) corresponding to the second read...
2695 days ago
BIMA V3: an aligner customized for mate pair library sequencing
Summary: Mate pair library sequencing is an effective and economical method for detect...fortunately, the mapping and alignment of mate pair read pairs to a reference genome i...ary preparation protocol artifacts (biotin junction reads...2694 days ago
- PEAR is an ultrafast, memory-efficient and highly accurate pair-end read merger. It is fully parallelized and can run...ory. PEAR evaluates all possible paired-end read overlaps and without requirin...ntation, it can merge millions of paired end reads...
2689 days ago
