Results for "read depth"
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Metagenomics assembly workshop !!
Welcome to the one-day metagenomics assembly workshop. This tutorial will guide you through the typical step...ly IDBA-UD Assembly Ray Assembly Gene Prediction Assembly Evaluation Read...2590 days ago
- SSPACE standard is a stand-alone program for scaffolding pre-assembled contigs using NGS paired-read data. It is unique in offerin...e-assembled contig sequences (FASTA) and NGS paired-read...
2573 days ago
CABOG: Celera Assembler with Best Overlap Graph
CABOG (Celera Assembler with Best Overlap Graph) is scientific software for DNA r...ation of all sequencing machines, namely, that they read out very few DNA letters at a...ns of letters long from the hundreds of letters per read...2563 days ago
- The process of finishing a genome and moving it from a draft stage...air information can be valuable in augmenting short-read assemblies and reconstructing...pen-source assembly tools) to merge arbitrary mated reads...
2557 days ago
- This tool is for users to upgrade their metagenomics assemblies using long reads. This includes fixing mis-assemblies and scaffolding/gap-filling. If you encounter any issues, please contact...
2556 days ago
Grinder / Biogrinder - A versatile omics shotgun and amplicon sequencing read simulator
Grinder is a versatile program to create random shotgun and amplicon sequence libraries based on DNA, RNA or prote...sequence-based project, e.g. should the library be paired-end or not, how many reads...2554 days ago
- Circular plots are useful to represent complicated informations. They are used in 2 specific cases: when yo...ut. This page aims to learn you how to use the library, so I strongly advise to read...
2528 days ago
- The Charm City Circleator--or Circleator for short--is a Perl-based visualization tool...timepoints. Visualizing coverage plots of RNA-Seq read alignments. Key Features...SNPs, tab-delimited files Outputs publication-ready...
2521 days ago
Perlbrew: admin-free perl installation management tool.
perlbrew is an admin-free perl installation management tool. The latest version is 0.79, read the release note: Release 0.79. Copy & Paste thi...d initialization. For more advanced installation process, please read&...2505 days ago
- Typically in comparative genomics, we can identify anchors, chain them into syntenic... rules to screen these blocks. So the question is: given the expected depth (quota) along both x- and y-a...
2486 days ago
