Results for "sequences"
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...reads, such as those produced by Oxford Nanopore Technologies Ltd. It can be used to scaffold high-quality draft genome assemblies with any long sequences (eg. ONT reads, PacBio reads,...2736 days ago
Maq: Mapping and Assembly with Quality
...h Quality It builds assembly by mapping short reads to reference sequences. Maq is a project hosted by&n...$PATH or to the same directory. Simulate diploid reference and read sequences, map reads, call variants and...2718 days ago
- ...CORD on both simulated and real data. We made our software publicly available on sourceforge. Conclusion. Our tests show that on closely related sequences RECORD outperforms more gener...
2715 days ago
- ...basic data structures for efficient data manipulation (mostly genomic sequences, alignments, variation etc.),...ny; Papaya, an all-purpose alignment tool for less diverged sequences; and SLAP, a contex...
2712 days ago
- ...e is a very useful program, which prepare a lot of types of bioinformatics analyses. There are three input options: amplicons, WGS (whole genome sequences) and metatranscriptomic data....
2709 days ago
- Cutadapt finds and removes adapter sequences, primers, poly-A tails and other types...mming tasks by finding the adapter or primer sequences in an error-tolerant way. It...fy and filter reads in various ways. Adapter sequences can contain IUPAC wildcard ch...
2696 days ago
- The automated reconstruction of genome sequences in ancient genome analysis is a multifaceted process. EAGER encompasses both state-of-the-art tools for each step as well as new compl...
2700 days ago
- ...mics remains a pivotal strategy to study the evolution of gene organization, and this primacy is reinforced by the growing number of full genome sequences available in public repositor...
2694 days ago
- ...ept to improve contiguity of genome assemblies based on long molecule sequences, often with dramatic outcomes...evaluated this program for assemblies generated with Oxford nanopore sequences, the program should work with...
2691 days ago
- ...operly. Compare DNA to proteins, with frameshifts. Compare PSSMs to sequences Calculate the likelihood of chance similarities between random sequences. Do split and spliced alignm...
2691 days ago
