Results for "sequencing"
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OPERA : Optimal Paired-End Read Assembler
...rors. Furthermore, our latest release contains the wrapper script OPERA-long-read that enables scaffolding with long-reads from third-generation sequencing technologies (PacBio or Oxfor...2789 days ago
- ...to cope with large volume of next-generation sequencing (NGS) data. NGS technologies brought a dramatic shift in the world of sequencing. Merely five years back, geno...to various government agencies. The tasks of sequencing and assembly were handled by...
2793 days ago
GAGE : Genome Assembly Gold-standard Evaluation
...nized this "bake-off" as an attempt to produce a realistic assessment of genome assembly software in a rapidly changing field of next-generation sequencing. The main results of GAGE hav...2791 days ago
- ...e approach, which can be applied to DNA copy number data obtained by array-Comparative Genomic Hybridization (CGH) or by (low-pass) whole genome sequencing (WGS). First, ‘GeneBreak’ col...
2148 days ago
- ...f miRNA (or more generall short RNA) expression using short-read deep sequencing data. In its present implemen...ecially adapted for the analysis of reads generated with the Illumina sequencing platform. MIRO allows to prep...
2764 days ago
- Metagenomics sequencing projects collect samples of DNA from uncharact...ical diversity present in a sample. The newest sequencing technologies have simultaneously made metagenomics easier, by making the sequencing process faster, and more diff...
2758 days ago
- ...IF3H. While it has been found in the transcriptome previously, genome sequencing did not identify a direct chromosomal fusion between these two genes. After SMRT sequencing, Ribbon shows that there are...
2747 days ago
- Background: Transcriptomics, metabolomics, metagenomics, and other various next-generation sequencing (-omics) fields are known for their production of large datasets. Visualizing such...
2747 days ago
- ...to generate synthetic next-generation sequencing reads. ART simulates sequencing reads by mimicking real seque...les summarized from large recalibrated sequencing data. ART can also simulate r...three major commercial next-generation sequencing platforms: Illumina's Solexa,...
2734 days ago
- ...sequence capture, in which DNA sequencing libraries are enriched for ge...uences from high-throughput DNA sequencing reads. Targeted bait capture...ine starts with high-throughput sequencing reads (for example from Illum...utative paralogs, and calculate sequencing depth. For more information,&...
2733 days ago
