Results for "small RNA-Seq"
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EXCAVATOR2 is a collection of bash, R and Fortran scripts and codes that analyses Whole Exome Sequencing (WES) dat...vents.EXCAVATOR2 can be effectively employed for the identification of CNVs in small a...2713 days ago
- PRISM is a software for split read (reads which span across a structrual variant -- SV ) mapping and SV calling from the mapping result. PRISM is able to detect small i...
2702 days ago
- Motif based sequence analysis suits The MEME Suite allows the biologist to discover novel motifs in collections of unaligned nucleotide or protein sequences, and...
2690 days ago
Modular, efficient and constant-memory single-cell RNA-seq preprocessing
With kallisto | bustools you can...erform RNA velocity and single-nuclei RNA-seq analsis Quantify data from n.... Obtain QC reports from single-cell RNA-seq data The kallisto | b...ficient pre-processing of single-cell RNA-seq, Nature Biotechnology (2021)....1126 days ago
FSA: Fast Statistical Alignment
FSA is a probabilistic multiple sequence alignment algorithm which uses a "distance-based" approach to aligning ho...ple Alignments." FSA brings the high accuracies previously available only for small-s...2645 days ago
Strand Life Sciences announces the release of Strand NGS v3.1 at ASHG 2017
...rs (UMIs) for DNA-, RNA-, and small-RNA-Seq. Strand Life Sciences anno...he first theme is large-scale RNA-Seq data analysis. Current cross-cohort RNA- and small-RNA-Seq studies span tens of re..., or UMIs, for DNA-, RNA- and small-RNA-Seq. UMI support in Strand NGS is...2386 days ago
- A computational pipeline for identifying single-base substitutions between two closely related genomes without the...rage is insufficient for de novo assembly, and it can be extended to determine small i...
2622 days ago
Pacbio Long Reads Compatible Software and Tools
The following software packages are known to be compatible with PacBio® data, in addition to PacBio's own SMRT® Analysis suite. All packages are believed to be...2607 days ago
LoRDEC: a hybrid error correction program for long, PacBio reads
LoRDEC is a program to correct sequencing errors in long reads from 3rd generation sequencing with high error rate...s two sets of reads: the reference read set, whose error rate is assumed to be small,...2582 days ago
ChromHMM: Chromatin state discovery and characterization
ChromHMM is software for learning and characterizing chromatin states. ChromHMM can integrate multiple chromatin datasets such as ChIP-seq data of various histone modif...2573 days ago
