Results for "split reads"
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Cutadapt finds and removes adapter sequences, primers, po...anted sequence from your high-throughput sequencing reads. Cutadapt helps with these t...n error-tolerant way. It can also modify and filter reads in various ways. Adapter sequ...2712 days ago
- The objective of this activity is to help you understand how to run Velvet ...nd the process involved in producing a de novo assembly from Illumina reads. http://evomics.org/learning...
2717 days ago
- PRISM is a software for split read (reads which span across a structrual variant -- SV ) mapping and SV calling from the mapping result. PRISM is able to detect small insertions and abi...
2716 days ago
- caffMatch is a novel scaffolding tool based...high-quality scaffolds from NGS data (reads and contigs). The tool is wri...ligner in case one needs to first map reads to contigs (instead of provid...are .sam files produced after mapping reads to contigs and the resulting...
2713 days ago
BIMA V3: an aligner customized for mate pair library sequencing
Summary: Mate pair library sequencing is an effective and...ary preparation protocol artifacts (biotin junction reads, paired-end read contaminatio...d presence of structural variant breakpoints within reads increases mapping and alignme...2712 days ago
e-RGA: enhanced Reference Guided Assembly of Complex Genomes
Next Generation Sequencing has totally changed genomics:...assemble, de novo, an organism sequenced with short reads, the results are still far from those achievable with long reads. In this paper, we propose a...2707 days ago
GAM-NGS: genomic assemblies merger for next generation sequencing
GAM-NGS (Genomic Assemblies Merger for Next Generation Sequencing), whose primary goa...ng the same genomic locus (called blocks) are identified through reads' alignments and stored in a&n...2707 days ago
- PEAR is an ultrafast, memory-efficient and highly accurate pair-end read merger....her with a highly optimized implementation, it can merge millions of paired end reads within a couple of minutes on...
2707 days ago
MeGAMerge: A tool to merge assembled contigs, long reads from metagenomic sequencing runs
MeGAMerge MeGAMerge (A tool to merge assembled contigs, long reads from metagenomic sequencing runs) Description MeGAMerge is a perl based wrapper/tool that can accept any number of sequence (FAS...2707 days ago
- quickmerge uses a simple concept to improve contiguity of genome assemblies bas...es. The program uses information from assemblies made with illumina short reads and PacBio long reads to improve contiguities of an...
2707 days ago
