Results for "structural and sequence variation"
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...y between a central reference sequence and other sequences as concentric rings. BRIG w...ft genomes; customized graphs and annotations can be displayed. Usi...sence, truncation or sequence variation in a set of complete genomes...egions present in unassembled sequence data from multiple samples to...2644 days ago
- GenomeComp is a tool for summarizing, parsing and visualizing the genome wide sequence comparison results deriv...sily used to compare, parsing and visualize large genomic sequences, especially closely related...ition, it can also show other sequence features like repeat sequence...
2643 days ago
- This sockeye software uses the Ensembl database project to import sequence and annotation information from s...nally import their own custom sequence and annotation data. Individual annota...om 3D models. Ensembl-derived and imported sequences can be analyzed by using a s...
2643 days ago
DAGchainer: Computing Chains of Syntenic Genes in Complete Genomes
The DAGchainer software computes chains of syntenic genes found within complete genome sequences. As input, DAGchainer a...ng genes on each DNA molecule and the BLAST E-value score between ho...dered gene pairs are computed and reported. This algorithm can be us...s both the DAGchainer utility and a Jav...2643 days ago
Strand Life Sciences announces the release of Strand NGS v3.1 at ASHG 2017
Strand Life Sciences announces the release of Strand NGS v3.1 at ASHG 2017 ORLANDO, USA, Oct 17, 2017/ PRNewswi...ocols are natively supported, and an intuitive interface allows...using genomics. By enhancing sequence-based diagnostics and clinica...ic, and medical expertise, Strand is br...2396 days ago
PBSuite: Software for Long-Read Sequencing Data from PacBio
PBJelly - the genome upgrading tool. PBHoney - the structural variation discovery tool Both are contained...BHoney considers both intra-read discordance and soft-clipped tails of long reads to identify structural variants.2633 days ago
splitbam: splits a BAM by chromosomes
splitbam splits a BAM by chromosomes. Using the reference sequence dictionary (*.dict), it also creates some empty BAM files if no sam...(output file/bam pattern) REQUIRED. MUST contain __CHROM__ and end w...2632 days ago
YASRA: Reference based assembler
YASRA (Yet Another Short Read Assembler) performs comparative a...ntially from the genome being sequenced. Mapping reads to refer...TZ (Harris et al), a pairwise sequence aligner compatible with BLAST...performance, both in runtime and quality for 454 and Illumina sequence reads. YASRA us...2631 days ago
- A computational pipeline for identifying single-base substitutions between two close...of coverage is insufficient for de novo assembly, and it can be extended to determine sm...diversity of endangered species as the identified sequence...
2631 days ago
- COCACOLA is a general framework that combines different types of information: sequence COmposition, CoverAge across multiple samples, CO-alignment to reference genomes and paire...
2625 days ago
