List of In-silico Binding Site Prediction Tools
...nd structure and at least one structure of the protein-ligand complex...o forms from more than 40,000 structures. To identify protein binding...: http://www.ncbi.nlm.nih.gov/Structure/ibis/ibis.cgi is the NCBI Inf...fully automated approach for structure based function prediction usi...3746 days ago
Apps for Busy Bioinformatics Researchers !!!
DNAApp: DNAApp: for iPhone/iPad This is an iOS app that allows for the opening and analysis of DNA sequencing files...e SNAP and SIFT algorithms and augmented with experimentally derived function/structure...3543 days ago
Binding Site Prediction in Protein !
The interaction between proteins and other molecules is fundamental to all...urface and tools for predicting the structure of the intermolecular complex...of pockets and cavities in proteins structure, and quantitation of their vo... The server utilizes protein-structure...2204 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
Commercial tools Strand NGS offers many different tools including alignment, RNA-Se...using ion channels for analysis of single RNA/DNA structures) software pipeline; tailored...he SNPs, estimation of the linkage disequilibrium structure...2911 days ago
Genome Assembly Tools and Software - PART1 !!
...ly formatted to specific data structure. Currently, existing data structure for this usage can be predomi...ies an align-layout-consensus structure, consisting of three major st...in-coding genes using a graph structure combining both de Bruijn grap...l approach to reconstruct the structure...2688 days ago
Phylogenetic & Molecular Genetics Terms and Definitions
analog -- A feature that appears similar in two taxa which have originated from two diffe...hat also possessed that feature. homology -- Two structures are considered homologous wh...erited from a common ancestor which possessed the structure...2464 days ago
Computational resources for TE discovery and TE detection
Transposable Elements (TEs) to genome structure and evolution as well as their impact on genome sequencing, assembly, annotation and alignment has generated increasing inter...2276 days ago
Tools to Predict the Impact of Missense Variants !
Prioritizing missense variants for further experimental investigation is a key challenge in current sequencing studie...n‐2 (PP2)“Predicts possible impact of an amino acid substitution on the structure...2205 days ago
Protein-Protein Interaction Sites Predictions !
The study of Protein–Protein Interactions (PPIs) has a crucial role in biology, med...interacting sites by homology modeling of complex structures HotPOINT Prediction of pro...n of DNA-protein interactions DISPLAR Given the structure...2204 days ago
Tools for Protein-Protein Docking !
Predicting the structure of protein–protein complexes using docking approaches is a...nges. Following are the tools to predict the structure of protein–protein comp...search: Monte Carlo with low and high resolution structure...2204 days ago