Tags: Bioinformatics, LoRMA, Tool, Correcting, Errors, Reads, Sequencing
2160 days ago
CovCal: Coverage / Read Count Calculator
Coverage / Read Count Calculator Calculate how much sequencing you need to hit a target depth of coverage (or vice versa). Instructions: set the read length/configuration and genome size, then select what you want to calculate. Written by Stephen Turner, based on the Lander-Waterman formula, i...Tags: Bioinformatics, covcal, Tool, Coverage, Reads, Sequencing
2160 days ago
Tags: Bioinformatics, Rearrangement, Mauve, Tool, Alignment
1965 days ago
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm)
Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm) is a microbial (bacterial and archaeal) gene finding program developed at Oak Ridge National Laboratory and the University of Tennessee. Key features of Prodigal include: Speed: Prodigal is an extremely fast gene r...Tags: Bioinformatics, Analysis, Gene, Prediction, Tool, Prodigal, Mathod
2678 days ago
Tags: Bioinformatics, Tool, Installation, Compile, HPC, Software, EasyBuild
2648 days ago
Tags: Bioinformatics, Analysis, Assembly, Genome, Visialization, Tool, View, Hive, Plot, HivePlot
2629 days ago
gbtools: Interactive Visualization of Metagenome Bins in R
We have developed gbtools, a software package that allows users to visualize metagenomic assemblies by plotting coverage (sequencing depth) and GC values of contigs, and also to annotate the plots with taxonomic information. Different sets of annotations, including taxonomic assignments from cons...Tags: Bioinformatics, gbtools, Genome, Tool, GC, Bin, Plot
2590 days ago
Tags: Tool, Conversion, Recover, Synteny, Blocks, Multiple, Alignment, MAF, Format, maf2synteny
2538 days ago