Nishi Singh
A Bioinformatician !!!
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For a given DNA sequence find its RNA transcript, find its reverse complement and check if the reverse complement contains a start codon
By Nishi Singh 3152 days ago
#!/usr/bin/perl
use strict;
use warnings;
my $DNA = "GATTACACAT";
#transcribe DNA to RNA - T changes to U
my $RNA = $DNA;
$RNA =~ s/T/U/g;
print "RNA sequence is $RNA\n";
#find the reverse complement of $DNA using substitution operator
#first - reverse the sequence
my $rcDNA = reverse($DNA);
$rcDNA =~ s/T/A/g;
$rcDNA =~ s/A/T/g;
$rcDNA =~ s/G/C/g;
$rcDNA =~ s/C/G/g;
print "Reverse complement of $DNA is $rcDNA\n"; #did it work?
#find the reverse complement of $DNA using translation operator
#first - reverse the sequence
$rcDNA = reverse($DNA);
#then - complement the sequence
$rcDNA =~ tr/ACGT/TGCA/;
#then - print the reverse complement
print "Reverse complement of $DNA is $rcDNA\n";
#look for a start codon in the reverse sequence
if($rcDNA =~ /ATG/){
print "Start codon found\n";
}
else{
print "Start codon not found\n";
}
