BOL: Extract fasta sequence with Ids with Bash script

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BioScripts
Archana Malhotra
Extract fasta sequence with Ids with Bash script

Extract fasta sequence with Ids with Bash script

By Archana Malhotra 2585 days ago

#!/bin/bash
while IFS='' read -r line || [[ -n "$line" ]]; do
    echo "Text read from file: $line"
    samtools faidx ONT.fasta $line > $line.faa
done < "$1"