Surabhi Chaudhary
A Bioinformatician
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Extract the sequence by IDs !
By Surabhi Chaudhary 1603 days ago
#This method can be applied directly to FASTA or a FASTQ file, compressed or uncompressed files. Seqtk is a fast and lightweight tool for processing biological data (FASTA/FASTQ). if you have a list of identifiers that you would like to extract from a file, you can run this command as follows:
#Extract sequences with names in file name.list, one sequence name per line:
seqtk subseq input.fasta name.list > output.fasta
