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Results for "BAM"

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• • Jit@jit.aber

  

  SAM and BAM handling with Perl http://search.cpan.org/~lds/Bio-SamTools/lib/Bio/DB/Sam.pm # Perl #SAM #BAM

  Tags: SAM, BAM

  2612 days ago

• • Jit@jit.aber

  

  Convert a SAM file to tab-delimited alignment coordinates https://gist.github.com/sjackman/7016520 #SAM #BAM #Convert #Tab

  Tags: SAM, BAM, Convert, Tab

  2611 days ago

• • Jit@jit.aber

  

  Bioinformatics tutorial https://jasonjwilliamsny.github.io/wrangling-genomics/01-automating_a_workflow.html #Workflow #Tutorial #BAM #SAM #SNP

  Tags: Workflow, Tutorial, BAM, SAM, SNP

  2198 days ago

• • Neelam Jha@neelam

  

  Generate consensus from BAM file samtools mpileup -uf chr5B_leaf_rust.fasta M27454_5B_reads_sorted.bam | bcftools call -c | vcfutils.pl vcf2fq #BAM #Consensus

  Tags: BAM, Consensus

  2023 days ago

• • Jit@jit.aber

  

  Ribbon genomics http://genomeribbon.com/ #Visualization #Ribbon #Graph #Genome #BAM #SAM #Mummer

  Tags: Visualization, Ribbon, Graph, Genome, BAM, SAM, Mummer

  1975 days ago

• • Jit@jit.aber

  

  #Split the #BAM file $ /home/urbe/Tools/bamtools/bin/bamtools split -in improved3.fasta.sorted.bam -reference #bamtools

  Tags: Split, BAM, bamtools

  1955 days ago

• • Jit@jit.aber

  

  Get the secondary hists reads count from SAM awk '{ print $2 }' out.sam| grep "2048" | wc -l #SAM #BAM #Secondary #Hits

  Tags: SAM, BAM, Secondary, Hits

  1828 days ago

• • Rahul Agarwal@raag

  

  http://bam.iobio.io/ #bam #vcf #analysis

  Tags: bam, vcf, analysis

  3434 days ago

• • Neelam Jha@neelam

  

  BAM2BED conversion bamToBed -i overall_exp_genome_rep1.bam > alignment.bed #Bed #bam #bamToBed #convert

  Tags: Bed, bam, bamToBed, convert

  2017 days ago

• • Jit@jit.aber

  

  Split the bam file by chromosome. $ bamtools split -in file.bam -reference #Split #Bam #Bamtools

  Tags: Split, Bam, Bamtools

  2614 days ago

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