Points: 1578
Neelam Jha
Brief description:
Bioinformatics Beginner
Location:
Patna/Varanasi
Interests:
Skills:
About me
I am new to Bioinformatics, and currently doing research at BHU. I am keen to learn new bioinformatics tools and techniques, and make some good friends.
Steps to find all the repeats in the genome !
Last updated 240 days ago by Neelam JhaTo find repeats in a genome from 2 to 9 length using a Perl script, you can use the RepeatMasker tool with the "--length" option[0]. Here's a step-by-step guide: Install RepeatMasker: First, you need to install RepeatMasker on your system. You...-
IUPAC codes
Last updated 2237 days ago by Neelam JhaIUPAC codes DNA: Nucleotide Code: Base: ---------------- ----- A.................Adenine C.................Cytosine G.................Guanine T (or U)..........Thymine (or Uracil) R.................A or G Y.................C or... -
Comprehensive list of visualization tools for biological pathways
Last updated 2279 days ago by Neelam JhaThe study of biological pathways is a key to understand the different processes inside a cell: proteins exert their function not in isolation but in a tightly controlled network of interactions and reactions. Activation of a pathway typically leads... -
Converting FASTQ to FASTA
Last updated 2297 days ago by Neelam JhaThere are several ways you can convert fastq to fasta sequences. Some methods are listed below. Using SED sed can be used to selectively print the desired lines from a file, so if you print the first and 2rd line of every 4 lines, you get the...
REST API
By Neelam Jha 936 days agoREST API The Representational State Transfer (REST) sample clients are provided for a number of programming languages.
- Neelam Jha posted a new ad in the ResearchLabs Pevzner Lab !
- Neelam Jha posted a new ad in the Opportunity Genomics India Conference 2024 !
- Neelam Jha posted to the wire
- Neelam Jha created a page Steps to find all the repeats in the genome !
- Neelam Jha published a news post NCBIBLAST+ 2.14.1 now available
- Neelam Jha bookmarked MitoFinder
- Neelam Jha posted a new ad in the Opportunity Program Officer, Bioinformatics at Jhpiego
- Neelam Jha published a news post GenBank release 257.0 is now available!
NCBIBLAST+ 2.14.1 now available
By Neelam Jha 241 days agoNCBIBLAST+ 2.14.1 now available with improved documentation, faster and more reliable database downloads, and some bug fixes.GenBank release 257.0 is now available!
By Neelam Jha 248 days agoGenBank release 257.0 is now available! This release has 25.10 trillion bases and 3.69 billion records.NCBI BLAST have added new columns to the Descriptions
By Neelam Jha 1243 days agoNCBI BLAST have added new columns to the Descriptions Table for web BLAST output.Submit your SARS-CoV-2 sequence data to GenBank
By Neelam Jha 1478 days agoSubmit your SARS-CoV-2 sequence data to GenBank and SRA with our new submission landing page.
MitoFinder
By Neelam Jha 242 days agogithub.com - Allio, R., Schomaker-Bastos, A., Romiguier, J., Prosdocimi, F., Nabholz, B., & Delsuc, F. (2020) Mol Ecol Resour. 20, 892-905. (publication link) Mitofinder is a pipeline to assemble mitochondrial genomes...Understanding GO analysis
By Neelam Jha 444 days agoadvaitabio.com - The confusion about gene ontology and gene ontology analysis can start right from the term itself. There are actually two different entities that are commonly referred to as gene ontology or “GO”: the ontology itself, which is a...Collection of Graph Visualization tools !
By Neelam Jha 458 days agopangenome.github.io - Standard approaches to genome inference and analysis relate sequences to a single linear reference genome. This is efficient but has a fundamental problem: Differences from this reference are hard to observe and describe in a coherent way. Variation...Bioinformatics Tutorial !
By Neelam Jha 613 days agoastrobiomike.github.io - This site aims to be a useful resource for bioinformatics beginners. Feel free to jump right in with the section most relevant to you, and if you're not sure, then the place to start is definitely Unix
- By Neelam Jha 626 days ago
- By Neelam Jha 758 days agoBLAST+ 2.13.0 now available with SRA BLAST, ARM Linux executables, and database metadata! https:/
/ loom.ly/ O0WxVJI #NCBIBLAST - By Neelam Jha 760 days agoTen quick tips for deep learning in biology https:/
/ journals.plos.org/ ploscompbiol/ article?id=10.1371/ journal.pcbi.1009803 #Biology #Tools #Learn
Question: What is the p-value?
Question: Unable to restart Apache !
Question: Why bioinformatics is important ?
analyzing codon usage
By Neelam Jha 1633 days agoperl script analyzing codon usage in an input sequence to evaluate how efficiently it will be expressed in Anopheles gambiae. The input codon usage table derived from highly‐expressed A. gambiae genes is appended below.ComparativeGenomics Exercise2
By Neelam Jha 2074 days agoCOMPARATIVE MICROBIAL GENOMICS ANALYSIS WORKSHOP @ cbs.dtu.dk Free Bioinformatics workbench https://www.mn.uio.no/ifi/english/research/networks/clsi/earlier_seminars/2012/tammivesth_osloseminarfinal.pdfBioinformatician at work !!!
By Neelam Jha 3535 days agoYet another peep up view of a bioinformatician research laboratory ...
bioinfoirmatics study - research partner
For bioinformaticians to study , research toghether ( to share knowlwdge and cooperate )
Awk
The AWK utility is an interpreted programming language typically used as a data extraction and reporting tool. It is a standard feature of most Unix-like operating systems.(Source: Wikipedia)
Ruby and BioRuby
Ruby and BioRuby for biologist.
BioInformatics National Certification (BINC)
BioInformatics National Certification (BINC) is a government of India initiative to recognize and certify bioinformatician.
