Points: 1586
Neel
Interesting plots https:/
(154 days ago)
Brief description:
Bioinformatics Beginner
Location:
Patna/Varanasi
Interests:
Skills:
About me
I am new to Bioinformatics, and currently doing research at BHU. I am keen to learn new bioinformatics tools and techniques, and make some good friends.
Steps to find all the repeats in the genome !
Last updated 448 days ago by NeelTo find repeats in a genome from 2 to 9 length using a Perl script, you can use the RepeatMasker tool with the "--length" option[0]. Here's a step-by-step guide: Install RepeatMasker: First, you need to install RepeatMasker on your system. You...-
IUPAC codes
Last updated 2445 days ago by NeelIUPAC codes DNA: Nucleotide Code: Base: ---------------- ----- A.................Adenine C.................Cytosine G.................Guanine T (or U)..........Thymine (or Uracil) R.................A or G Y.................C or... -
Comprehensive list of visualization tools for biological pathways
Last updated 2487 days ago by NeelThe study of biological pathways is a key to understand the different processes inside a cell: proteins exert their function not in isolation but in a tightly controlled network of interactions and reactions. Activation of a pathway typically leads... -
Converting FASTQ to FASTA
Last updated 2505 days ago by NeelThere are several ways you can convert fastq to fasta sequences. Some methods are listed below. Using SED sed can be used to selectively print the desired lines from a file, so if you print the first and 2rd line of every 4 lines, you get the...
- Neel posted a new ad in the ResearchLabs Chirag Lab at IISc
- Neel posted a new ad in the ResearchLabs Pevzner Lab !
- Neel posted a new ad in the Opportunity Genomics India Conference 2024 !
NCBIBLAST+ 2.14.1 now available
By Neel 449 days agoNCBIBLAST+ 2.14.1 now available with improved documentation, faster and more reliable database downloads, and some bug fixes.GenBank release 257.0 is now available!
By Neel 456 days agoGenBank release 257.0 is now available! This release has 25.10 trillion bases and 3.69 billion records.NCBI BLAST have added new columns to the Descriptions
By Neel 1451 days agoNCBI BLAST have added new columns to the Descriptions Table for web BLAST output.Submit your SARS-CoV-2 sequence data to GenBank
By Neel 1686 days agoSubmit your SARS-CoV-2 sequence data to GenBank and SRA with our new submission landing page.
BioKit: a set of tools dedicated to bioinformatics, data visualisation
By Neel 156 days agobiokit.readthedocs.io - BioKit is a set of tools dedicated to bioinformatics, data visualisation (biokit.viz), access to online biological data (e.g. UniProt, NCBI thanks to bioservices). It also contains more advanced tools related to data analysis...Panacus : A Counting Tool for Pangenome Graphs
By Neel 159 days agogithub.com - panacus is a tool for calculating statistics for GFA files. It supports GFA files with P and W lines, but requires that the graph is blunt, i.e., nodes do not overlap and consequently, each link (L) points...SeqCAT: Sequence Conversion and Analysis Toolbox
By Neel 159 days agomtb.bioinf.med.uni-goettingen.de - Your all-in-one solution for smooth conversion of sequence coordinates. Designed for bioinformatics data analysis and daily laboratory work, SeqCAT simplifies sequence coordinate conversion. Extract gene and transcript information, manipulate...MitoFinder
By Neel 450 days agogithub.com - Allio, R., Schomaker-Bastos, A., Romiguier, J., Prosdocimi, F., Nabholz, B., & Delsuc, F. (2020) Mol Ecol Resour. 20, 892-905. (publication link) Mitofinder is a pipeline to assemble mitochondrial genomes...
Question: How to downgrade the Perl
Question: Alienomics error, how to fix it !
Question: What is the p-value?
Question: Unable to restart Apache !
analyzing codon usage
By Neel 1841 days agoperl script analyzing codon usage in an input sequence to evaluate how efficiently it will be expressed in Anopheles gambiae. The input codon usage table derived from highly‐expressed A. gambiae genes is appended below.ComparativeGenomics Exercise2
By Neel 2282 days agoCOMPARATIVE MICROBIAL GENOMICS ANALYSIS WORKSHOP @ cbs.dtu.dk Free Bioinformatics workbench https://www.mn.uio.no/ifi/english/research/networks/clsi/earlier_seminars/2012/tammivesth_osloseminarfinal.pdfBioinformatician at work !!!
By Neel 3743 days agoYet another peep up view of a bioinformatician research laboratory ...
bioinfoirmatics study - research partner
For bioinformaticians to study , research toghether ( to share knowlwdge and cooperate )
Awk
The AWK utility is an interpreted programming language typically used as a data extraction and reporting tool. It is a standard feature of most Unix-like operating systems.(Source: Wikipedia)
Ruby and BioRuby
Ruby and BioRuby for biologist.
BioInformatics National Certification (BINC)
BioInformatics National Certification (BINC) is a government of India initiative to recognize and certify bioinformatician.
