Points: 1649
Neel
Interesting plots https:/
(866 days ago)
Brief description:
Bioinformatics Beginner
Location:
Patna/Varanasi
Interests:
Skills:
About me
I am new to Bioinformatics, and currently doing research at BHU. I am keen to learn new bioinformatics tools and techniques, and make some good friends.
Steps to find all the repeats in the genome !
Last updated 1160 days ago by NeelTo find repeats in a genome from 2 to 9 length using a Perl script, you can use the RepeatMasker tool with the "--length" option[0]. Here's a step-by-step guide: Install RepeatMasker: First, you need to install RepeatMasker on your system. You...-
IUPAC codes
Last updated 3157 days ago by NeelIUPAC codes DNA: Nucleotide Code: Base: ---------------- ----- A.................Adenine C.................Cytosine G.................Guanine T (or U)..........Thymine (or Uracil) R.................A or G Y.................C or... -
Comprehensive list of visualization tools for biological pathways
Last updated 3199 days ago by NeelThe study of biological pathways is a key to understand the different processes inside a cell: proteins exert their function not in isolation but in a tightly controlled network of interactions and reactions. Activation of a pathway typically leads... -
Converting FASTQ to FASTA
Last updated 3217 days ago by NeelThere are several ways you can convert fastq to fasta sequences. Some methods are listed below. Using SED sed can be used to selectively print the desired lines from a file, so if you print the first and 2rd line of every 4 lines, you get the...
The Best Free Crash Course on Large Language Models (LLMs) I've Come Across
By Neel 91 days agoUsing an LLM and understanding how it actually works.10 Books to Kickstart (and Level Up) Your Bioinformatics Journey
By Neel 448 days agoIf you’re starting out in bioinformatics or looking to sharpen your computational biology skills, having the right learning resources makes all the difference. Here’s my curated list of 10 must-read books — from beginner-friendly introductions to...A Beginner's Guide to Using Kraken for Taxonomic Classification
By Neel 690 days agoKraken is a versatile and efficient tool for taxonomic classification in metagenomics. Its speed, accuracy, and flexibility make it a favorite among bioinformaticians. By following this guide, you can set up and use Kraken to unlock insights into...Mycology Research Resources for Bioinformaticians: Unlocking the Fungal Kingdom
By Neel 690 days agoFungal research is a rapidly growing field with vast implications for medicine, agriculture, and industry. For bioinformaticians, the availability of specialized resources—databases, tools, and community platforms—opens doors to innovative...
- Neel posted a new ad in the ResearchLabs Liberles Research Group
- Neel published a blog post The Best Free Crash Course on Large Language Models (LLMs) I've Come Across
- Neel posted a new ad in the Opportunity Assistant Professor in Rapid Marine Adaptation @ UVienna
- Neel posted a new ad in the Opportunity PostDoc in Germany @ EvolutionaryTheory
- Neel posted a new ad in the ResearchLabs Khalturin Lab
NCBIBLAST+ 2.14.1 now available
By Neel 1161 days agoNCBIBLAST+ 2.14.1 now available with improved documentation, faster and more reliable database downloads, and some bug fixes.GenBank release 257.0 is now available!
By Neel 1169 days agoGenBank release 257.0 is now available! This release has 25.10 trillion bases and 3.69 billion records.NCBI BLAST have added new columns to the Descriptions
By Neel 2163 days agoNCBI BLAST have added new columns to the Descriptions Table for web BLAST output.Submit your SARS-CoV-2 sequence data to GenBank
By Neel 2399 days agoSubmit your SARS-CoV-2 sequence data to GenBank and SRA with our new submission landing page.
Jaeger : an accurate and fast deep-learning tool to detect bacteriophage sequences
By Neel 446 days agogithub.com - Jaeger is a tool that utilizes homology-free machine learning to identify phage genome sequences that are hidden within metagenomes. It is capable of detecting both phages and prophages within metagenomic assemblies. The performance of the Jaeger...dna2bit: an ultra-fast and accurate genomic distance estimation software
By Neel 447 days agogithub.com - dna2bit: an ultra-fast and accurate genomic distance estimation software dna2bit is a software tool developed in C++11, leveraging the capabilities of OpenMP for parallel computing and the popcount technique for efficient bit manipulation.BakRep (Denglish blend of Bakterien & Repository) simplifies access to this data
By Neel 447 days agobakrep.computational.bio - 2,438,386 bacterial genomes at your fingertips consistently processed & characterized, enriched with metadata, accessible via a flexible search engine. BakRep (Denglish blend of Bakterien & Repository) simplifies access to this data. It...BioKit: a set of tools dedicated to bioinformatics, data visualisation
By Neel 868 days agobiokit.readthedocs.io - BioKit is a set of tools dedicated to bioinformatics, data visualisation (biokit.viz), access to online biological data (e.g. UniProt, NCBI thanks to bioservices). It also contains more advanced tools related to data analysis...
Question: How to downgrade the Perl
Question: Alienomics error, how to fix it !
Question: What is the p-value?
analyzing codon usage
By Neel 2553 days agoperl script analyzing codon usage in an input sequence to evaluate how efficiently it will be expressed in Anopheles gambiae. The input codon usage table derived from highly‐expressed A. gambiae genes is appended below.ComparativeGenomics Exercise2
By Neel 2995 days agoCOMPARATIVE MICROBIAL GENOMICS ANALYSIS WORKSHOP @ cbs.dtu.dk Free Bioinformatics workbench https://www.mn.uio.no/ifi/english/research/networks/clsi/earlier_seminars/2012/tammivesth_osloseminarfinal.pdfBioinformatician at work !!!
By Neel 4455 days agoYet another peep up view of a bioinformatician research laboratory ...
