Points: 1639
Neel
Interesting plots https:/
(624 days ago)
Brief description:
Bioinformatics Beginner
Location:
Patna/Varanasi
Interests:
Skills:
About me
I am new to Bioinformatics, and currently doing research at BHU. I am keen to learn new bioinformatics tools and techniques, and make some good friends.
Steps to find all the repeats in the genome !
Last updated 918 days ago by NeelTo find repeats in a genome from 2 to 9 length using a Perl script, you can use the RepeatMasker tool with the "--length" option[0]. Here's a step-by-step guide: Install RepeatMasker: First, you need to install RepeatMasker on your system. You...-
IUPAC codes
Last updated 2915 days ago by NeelIUPAC codes DNA: Nucleotide Code: Base: ---------------- ----- A.................Adenine C.................Cytosine G.................Guanine T (or U)..........Thymine (or Uracil) R.................A or G Y.................C or... -
Comprehensive list of visualization tools for biological pathways
Last updated 2956 days ago by NeelThe study of biological pathways is a key to understand the different processes inside a cell: proteins exert their function not in isolation but in a tightly controlled network of interactions and reactions. Activation of a pathway typically leads... -
Converting FASTQ to FASTA
Last updated 2975 days ago by NeelThere are several ways you can convert fastq to fasta sequences. Some methods are listed below. Using SED sed can be used to selectively print the desired lines from a file, so if you print the first and 2rd line of every 4 lines, you get the...
10 Books to Kickstart (and Level Up) Your Bioinformatics Journey
By Neel 206 days agoIf you’re starting out in bioinformatics or looking to sharpen your computational biology skills, having the right learning resources makes all the difference. Here’s my curated list of 10 must-read books — from beginner-friendly introductions to...A Beginner's Guide to Using Kraken for Taxonomic Classification
By Neel 447 days agoKraken is a versatile and efficient tool for taxonomic classification in metagenomics. Its speed, accuracy, and flexibility make it a favorite among bioinformaticians. By following this guide, you can set up and use Kraken to unlock insights into...Mycology Research Resources for Bioinformaticians: Unlocking the Fungal Kingdom
By Neel 447 days agoFungal research is a rapidly growing field with vast implications for medicine, agriculture, and industry. For bioinformaticians, the availability of specialized resources—databases, tools, and community platforms—opens doors to innovative...Exploring RNA Sequence Analysis: Tools for Every Bioinformatician
By Neel 448 days agoThe bioinformatics landscape for RNA sequence analysis is vast, with tools catering to specific needs. Whether you’re studying coding RNAs, non-coding RNAs, or exploring RNA-protein interactions, the right tools can transform your data into...
- Neel published a blog post 10 Books to Kickstart (and Level Up) Your Bioinformatics Journey
- Neel published a blog post A Beginner's Guide to Using Kraken for Taxonomic Classification
- Neel published a blog post Mycology Research Resources for Bioinformaticians: Unlocking the Fungal Kingdom
- Neel published a blog post Exploring RNA Sequence Analysis: Tools for Every Bioinformatician
- Neel created a new bio-script Python script to split a genome sequence into overlapping windows of 100 base pairs
NCBIBLAST+ 2.14.1 now available
By Neel 919 days agoNCBIBLAST+ 2.14.1 now available with improved documentation, faster and more reliable database downloads, and some bug fixes.GenBank release 257.0 is now available!
By Neel 926 days agoGenBank release 257.0 is now available! This release has 25.10 trillion bases and 3.69 billion records.NCBI BLAST have added new columns to the Descriptions
By Neel 1920 days agoNCBI BLAST have added new columns to the Descriptions Table for web BLAST output.Submit your SARS-CoV-2 sequence data to GenBank
By Neel 2156 days agoSubmit your SARS-CoV-2 sequence data to GenBank and SRA with our new submission landing page.
Jaeger : an accurate and fast deep-learning tool to detect bacteriophage sequences
By Neel 204 days agogithub.com - Jaeger is a tool that utilizes homology-free machine learning to identify phage genome sequences that are hidden within metagenomes. It is capable of detecting both phages and prophages within metagenomic assemblies. The performance of the Jaeger...dna2bit: an ultra-fast and accurate genomic distance estimation software
By Neel 204 days agogithub.com - dna2bit: an ultra-fast and accurate genomic distance estimation software dna2bit is a software tool developed in C++11, leveraging the capabilities of OpenMP for parallel computing and the popcount technique for efficient bit manipulation.BakRep (Denglish blend of Bakterien & Repository) simplifies access to this data
By Neel 205 days agobakrep.computational.bio - 2,438,386 bacterial genomes at your fingertips consistently processed & characterized, enriched with metadata, accessible via a flexible search engine. BakRep (Denglish blend of Bakterien & Repository) simplifies access to this data. It...BioKit: a set of tools dedicated to bioinformatics, data visualisation
By Neel 626 days agobiokit.readthedocs.io - BioKit is a set of tools dedicated to bioinformatics, data visualisation (biokit.viz), access to online biological data (e.g. UniProt, NCBI thanks to bioservices). It also contains more advanced tools related to data analysis...
Question: Any good bioinformatics suggestions !
Question: How to downgrade the Perl
Question: Alienomics error, how to fix it !
Question: What is the p-value?
analyzing codon usage
By Neel 2310 days agoperl script analyzing codon usage in an input sequence to evaluate how efficiently it will be expressed in Anopheles gambiae. The input codon usage table derived from highly‐expressed A. gambiae genes is appended below.ComparativeGenomics Exercise2
By Neel 2752 days agoCOMPARATIVE MICROBIAL GENOMICS ANALYSIS WORKSHOP @ cbs.dtu.dk Free Bioinformatics workbench https://www.mn.uio.no/ifi/english/research/networks/clsi/earlier_seminars/2012/tammivesth_osloseminarfinal.pdfBioinformatician at work !!!
By Neel 4213 days agoYet another peep up view of a bioinformatician research laboratory ...
