3399 days ago
3817 days ago
2522 days ago
CAR: Reconstructing Contiguous Regions of an Ancestral Genome
We describe a new method for predicting the ancestral order and orientation of those intervals from their observed adjacencies in modern species. We combine the res...2536 days ago
Multi-CAR: a tool of contig scaffolding using multiple references
...od to further revise our single reference-based scaffolding tool CAR into a new one called Multi-CAR such that it can utilize mult...ent the contigs of a draft genome. In practical usage, our Multi-CAR does not require prior knowle...2243 days ago
Genome Assembly Tools and Software - PART1 !!
...ly-specic gene assembly, homology-guided overlap graph construction, and careful graph traversal. Ope...de novo assemblers give us the best overall metagenomic assembly. SCARF – Scaffolded and Corre...2677 days ago
Compress and decompress the sequence with perl
use strict; use warnings; my @char; while () { @char = split //; } comp(\@char); #--------------------- my $com= "r0a3m4a4j0"; my @com = split //, $com; dcomp (\@com); #dcomp sub here sub dcomp { my ($com_ref)=@_; my @com=@$com_ref; my $car; for (my $aa=0; $aa2507 days ago
CAR: Reconstructing Contiguous Regions of an Ancestral Genome
We describe a new method for predicting the ancestral order and orientation of those intervals from their observed adjacencies in modern species. We combine the results from this method with data from chromosome painting experiments to produce a map of an early mammalian genome that accounts fo...Tags: Reconstruction, Contiguous, Regions, Ancestral, Genome, Bioinformatics, CAR
2536 days ago