Jit
5557 points
5557 points
Jitendra Narayan
2547 points
2547 points
Rahul Nayak
2300 points
2300 points
Neel
1586 points
1586 points
Rahul Agarwal
1188 points
1188 points
- Rahul Nayak created a new bio-script Awk command to keep only short the fasta header !
- Rahul Nayak bookmarked Snakemake Tutorials !
- Rahul Nayak created a new bio-script Bash script to find difference between two files !
- Rahul Nayak bookmarked Understanding HiFi Reads !
- Rahul Nayak commented on a bookmark chromoMap-An R package for Interactive Visualization and Annotation of Chromosomes
Question: How to downgrade the Perl
Question: Alienomics error, how to fix it !
Question: What is the p-value?
Question: Unable to restart Apache !
World promising health companies !
Last updated 1786 days ago by Rahul NayakThe health care industry is expected to sustain stable growth over the next decade for a variety of reasons. Advances in medicine have prolonged the average lifespans of most people, requiring more health care treatments over longer terms. In years...-
Parallel Processing with Perl !
Last updated 2280 days ago by Rahul NayakHere is a small tutorial on how to make best use of multiple processors for bioinformatics analysis. One best way is using perl threads and forks. Knowing how these threads and forks work is very important before implementing them. Getting to know... -
My commonly used commands in Bioinformatics
Last updated 2310 days ago by Rahul NayakFYI, I've found it useful to use MUMmer to extract the specific changes that Racon makes, so I can evaluate them individually: minimap -t 24 assembly.fasta long_reads.fastq.gz | racon -t 24 long_reads.fastq.gz - assembly.fasta... -
Interview Puzzles for Bioinformatician !
Last updated 2319 days ago by Rahul Nayak Comments (1)These are some of the most famous Interview Puzzles being asked in top tech companies.Here is a list of Top 25 puzzles which have been asked in top Tech Interview. 2 Eggs and 100 Floor Classic Puzzle Five pirates and gold coin Puzzle Six...
Snakemake Tutorials !
By Rahul Nayak 927 days agocarpentries-incubator.github.io - A lesson introducing the Snakemake workflow system for bioinformatics analysis. Prerequisites This is an intermediate lesson and assumes learners have already done some bioinformatics: Familiarity with the BASH command shell, including...MUM&Co is a simple bash script that uses Whole Genome Alignment information provided by MUMmer...
By Rahul Nayak 939 days agogithub.com - MUM&Co is able to detect:Deletions, insertions, tandem duplications and tandem contractions (>=50bp & <=150kb)Inversions (>=1kb) and translocations (>=10kb)PuffAligner: a fast, efficient and accurate aligner based on the Pufferfish index
By Rahul Nayak 945 days agogithub.com - PuffAligner, a fast, accurate and versatile aligner built on top of the Pufferfish index. PuffAligner is able to produce highly sensitive alignments, similar to those of Bowtie2, but much more quickly. While exhibiting similar speed to the ultrafast...Understanding HiFi Reads !
By Rahul Nayak 972 days agopacb.com - While little public data is available for either of the new synthetic long read approaches, Illumina showed an example comparison earlier this year at the Festival of Genomics & Biodata conference (FoG 2022). In the IGV screenshot...
List of bioinformatics packages for NGS analysis !
By Rahul Nayak 1342 days agoPackage suites gather software packages and installation tools for specific languages or platforms. We have some for bioinformatics software.Ancient whole genome duplication (WGD) detection tools !
By Rahul Nayak 1355 days agoThere are two methods for ancient WGD detection, one is collinearity analysis, and the other is based on the Ks distribution map. Among them, Ks is defined as the average number of synonymous substitutions at each synonymous site, and there is...
Single molecule Sequencing (SMS)
3rd generation sequencers
Bioinformatics Algorithms
Common algorithms underlying the following fundamental topics in bioinformatics
BioInformatics National Certification (BINC)
BioInformatics National Certification (BINC) is a government of India initiative to recognize and certify bioinformatician.
Next Generation Sequencing (NGS)
https://en.wikipedia.org/wiki/Sequencing
Curated set of ribosomal RNA (rRNA) reference sequences (targeted loci) with verifiable organism
By Rahul Nayak 1733 days agoMCBI have a curated set of ribosomal RNA (rRNA) reference sequences (targeted loci) with verifiable organism sources and current names. This set is critical for correctly identifying and classifying prokaryotic (bacteria and archaea) and fungal...ForBio and UiB course: Introduction to phylogenetic methods
By Rahul Nayak 1802 days agoThe is an introductory course that is aimed at students who will need to preform phylogenetic analyses in their work, but who have little or no experience with phylogenetic analyses.Github replacement !
By Rahul Nayak 1883 days agoGitLab as a replacement for for both GitHub and various continuous integration systemsUpdated ranking of institutes and countries based on developed biological databases
By Rahul Nayak 2141 days agoUpdated ranking of institutes and countries based on developed biological databases
- By Rahul Nayak 1400 days ago
- By Rahul Nayak 1683 days agoVisualize genome in terminal https:/
/ asciigenome.readthedocs.io/ en/ latest/ usage.html#quick-start #genome #visualisation
Marine bioinformatician ;)
By Rahul Nayak 3620 days ago Comments (1)A marine bioinformatician at work. Sorry jealous biotechnologist, this is how we work.Bioinformatician kidnaped !!!
By Rahul Nayak 4053 days agoSome fish kidnaped a bioinformatician for their genome analysis.
