Results for "Candidate"
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...contig alignment metrics. HapSolo evaluates candidate primary assemblies using BUSCO scores and then distinguishes among candidate assemblies using a cost funct...climbing to minimize cost over thousands of candidate assemblies. ...1084 days ago
- ...an independent quality control test for potential horizontal transfer candidates identified by alternative methods, especially those based on nucleic acid signatures. Candidates having high LPI scores are u...
2865 days ago
- ...of a gene from its native genomic environment and used it to identify candidate HGT events between closely related strains. The method confirms candidate transferred genes based on th...
2865 days ago
Method in Comparative genomics !!
...d motif cores, which we extended and collapsed into a small number of candidate regulatory motifs. These incl...fs are enriched in functionally related genes, allowing us to infer a candidate function for novel motifs. O...2725 days ago
DarkHorse: a method for genome-wide prediction of horizontal gene transfer
A new approach to rapid, genome-wide identification and ranking of horizontal transfer candidate proteins is presented. The method is quantitative, reproducible, and computationally un...2500 days ago
- ...me. Each alignment optimizes a composite score, taking into account simultaneously the two reads of a pair, and in case of RNA-seq, locating the candidate introns and adding up the sco...
2313 days ago
alienness : Rapid Detection of Candidate Horizontal Gene Transfers across the Tree of Life
Horizontal gene transfer (HGT) is the transmission of genes between organisms by other means than parental to offspring inheritance. While it is prevalent in prokaryotes...2237 days ago
mScaffolder: A comparative genome scaffolding tool
...high quality genome as the reference. It aligns the two genomes using nucmer utility from MUMmer and then orders and orients the contigs of the candidate genome guided by their alignm...2142 days ago
- ...me. Each alignment optimizes a composite score, taking into account simultaneously the two reads of a pair, and in case of RNA-seq, locating the candidate introns and adding up the sco...
2082 days ago
HipSTR: Haplotype inference and phasing for Short Tandem Repeats
...locus-specific PCR stutter models using an EM algorithm Mining candidate STR alleles from population-s...g data Employing a specialized hidden Markov model to align reads to candidate alleles while accounting for...1877 days ago
