Results for "Databases"
Bookmarks
Public Databases for Bioinformatics !
...://www.encodeproject.org/files/ENCFF177HHM/@@download/ENCFF177HHM.bam as we as the GENCODE annotation v29 from ftp://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_human/release...1130 days ago
7th International Conference on Bioinformatics and Computational Biology (BICoB)
...pproaches to molecular biology, multiscale modeling, pathways,gene networks. Computational Proteomics: Filtering and indexing sequence databases, Peptide quantification and i...3489 days ago
- ...pipeline.Its purpose is to allow smaller eukaryotic and prokaryotic genome projects to independently annotate their genomes and to create genome databases. MAKER identifies repeats, al...
3000 days ago
- ...related adaptors to access binary file formats including Bam, BigWig, BigBed, and USeq. The Bio::ToolBox package includes scripts for setting up databases of annotation, collecting ann...
2989 days ago
GeneValidator - Identify problems with predicted genes
GeneValidator helps in identifing problems with gene predictions and provide useful information extracted from analysing orthologs in BLAST databases. The results produced can be used...2800 days ago
Entrez Direct: E-utilities on the UNIX Command Line
Entrez Direct (EDirect) is an advanced method for accessing the NCBI's suite of interconnected databases (publication, sequence, structure, gene, variation, expression, etc.) from a UN...2746 days ago
Finding Patterns in Biological Sequences
...s). We also provide biological motivation, and methods of biological verification of such patterns. Finally we list publicly available tools and databases for pattern discovery. On-lin...2682 days ago
- ...common bioinformatics file-synchronization needs, including the Protein Data Bank (PDB) and National Center for Biotechnology Information (NCBI) databases. It can post-process download...
2616 days ago
SeqMule: Automated human exome/genome variants detection
...ons, such as pooling consensus calls from various callers, plotting a Venn diagram showing intersection among different callers, and downloading databases. SeqMule can be used for both...2607 days ago
NCBI Prokaryotic Genome Annotation Pipeline
...tailed description of the new version of the pipeline in NCBI Handbook chapter. NCBI's annotation pipeline depends on several internal databases and is not currently availabl...2537 days ago
