Results for "Formats"
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Structure of Binary files used for storing sequencing data-bam and sff
...ceforge.net/SAMv1.pdf (from page 12) sff file (for Ion torrent and 454 files): http://www.ncbi.nlm.nih.gov/Traces/trace.cgi?cmd=show&f=formats&m=doc&s=format#sff B...3911 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...& Reich, Genome Research 22(5): 939–946. PubMedCentral Data formats, data management, and alignme...ers on bioinformatics and computational genomics. Information on file formats used by the University of Cal...3770 days ago
Perl one-liner for bioinformatician !!!
...and sequencing data most of the bioinformaticians mung and wrangle around massive amounts of genomics text. There are several "standardized" file formats (FASTQ, SAM, VCF, etc.) and s...3619 days ago
Next generation sequencing in R or bioconductor environment
...organism. Documentation rtracklayer rtracklayer provides an interface for exporting annotation feature data to various genome browsers and file formats (such as GFF). See the Small...3615 days ago
Commercial and public next-gen-seq (NGS) software
...n, educational use and for use on open not-for-profit projects. Requires Linux or Mac OS X. PASS - It supports Illumina, SOLiD and Roche-FLX data formats and allows the user to modula...3510 days ago
Software packages for next gen sequence analysis
...educational use and for use on open not-for-profit projects. Requires Linux or Mac OS X. * PASS - It supports Illumina, SOLiD and Roche-FLX data formats and allows the user to modula...3233 days ago
- ...signed for converting reads or other nucleotide data between different formats. It supports, and can inter-c...o the middle of a pipeline for format conversion. Reformat autodetects formats based on file extensions and...
2705 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...files, HapMap format, MACH output, + 50 other formats consumes NCBI data directly...files with read alignment can be SOAP or SAM formats, users must also give raw rea...-wide Haplotype Analysis, Input: PLINK input formats (ped/map, tped/tfam, bed/bim/...2900 days ago
- ...the sequences within the raw read match or align to sequences within the reference genome. Alignment information is stored in the SAM or BAM file formats. bcftools: a set of companio...
2860 days ago
Genome Assembly Tools and Software - PART1 !!
...maps and their most common manipulations as they exist in a variety of formats. LightAssembler &ndash...equence assemblies and alignments.Supporting a range of input assembly formats, Tablet provides high-quality...2677 days ago
