Results for "Gene"


  • NearHGT

    Horizontal gene transfer (HGT), the transfer of genetic material between organisms, is crucial for genetic innovation and the evolution of genome architecture. Existing HGT detection algorithms rely on a strong phylogenetic signal distinguishing the transferred sequence from ancestral (vertically...

    Tags: Bioinformatics, NearHGT, Horizontal, Gene, Transfer, Haifa

    339 days ago

  • GeneValidator - Identify problems with predicted genes

    GeneValidator helps in identifing problems with gene predictions and provide useful information extracted from analysing orthologs in BLAST databases. The results produced can be used by biocurators and researchers who need accurate gene predictions. If you would like to use GeneValidator on a f...

    Tags: Bioinformatics, Analysis, NGS, Gene, Prediction, GeneValidator, Genome

    274 days ago

  • Gene Finding and Predictions

    In this exercise, a previously annotated gene will be used to measure the accuracy of different gene finding approaches. GRAIL, GENSCAN, geneid, FGENESH, GenomeScan, GrailEXP and GENEWISE will be used to annotate the sequence. Both search by signal, content and homology (protein and cDNA seq...

    Tags: Bioinformatics, Analysis, NGS, Gene, Prediction, Finding, Genome

    274 days ago

  • Useful Bioinformatics Tools

    Collections of few handy tools for bioinformatician

    Tags: Bioinformatics, Analysis, NGS, Tools, Gene, Genome, Format

    271 days ago

  • Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm)

    Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm) is a microbial (bacterial and archaeal) gene finding program developed at Oak Ridge National Laboratory and the University of Tennessee. Key features of Prodigal include: Speed: Prodigal is an extremely fast gene r...

    Tags: Bioinformatics, Analysis, Gene, Prediction, Tool, Prodigal, Mathod

    149 days ago

  • DeCoSTAR - Detection of Co-evolution

    DeCoSTAR is a software which aims at reconstructing ancestral gene or genome organizations, in the form of sets of neighborhood relations -adjacencies- between pairs of ancestral genes or gene domains.Ancestral genes or domains are deduced from reconciled gene trees in a context of birth, speciat...

    Tags: Bioinformatics, DeCoSTAR, Detection, Co-evolution, Reconstruction, Ancestral, Gene, Genome

    43 days ago