Points: 131
biogeek
GTN: A genome structure analysis tool http://homepage.fudan.edu.cn/zhouyan/files/2013/09/GNT_manual_v1.0.0.pdf #Tool #Genome #Validation
(1873 days ago)
Jit
5557 points
5557 points
Jitendra Narayan
2547 points
2547 points
Rahul Nayak
2300 points
2300 points
Neel
1626 points
1626 points
BioStar
1219 points
1219 points
- biogeek posted a new ad in the Opportunity One-year position for a bioinformatician / computational biologist in population genetics
- biogeek bookmarked bioinformatics workbook
- biogeek bookmarked pggb: the pangenome graph builder
- biogeek posted a new ad in the Opportunity RGCB recruitment notification for bioinformatician !
- biogeek posted a new ad in the ResearchLabs PLANT COMPUTATIONAL GENOMICS LAB – JILL WEGRZYN
- biogeek commented on the news BLAST nr version 5 database, (nr_v5)
Correct bash command to zip your vcf file
By biogeek 1880 days agoBash oneliner to extract all ids from a multifasta file
By biogeek 1895 days agoInstall snakemake and activate on conda
By biogeek 1895 days ago Comments (1)
- By biogeek 1873 days agoGTN: A genome structure analysis tool http:/
/ #Tool #Genome #Validationhomepage.fudan.edu.cn/ zhouyan/ files/ 2013/ 09/ GNT_manual_v1.0.0.pdf - By biogeek 1891 days agoUseful bioinformatics database for GATK analysis ftp:/
/ #GATK #Databaseftp.broadinstitute.org/ bundle/ hg38/
A quick guide to Phred scaling
Last updated 1891 days ago by biogeek Comments (1)A quick guide to Phred scaling• Phred value = −10 * log10(ε)• Examples:• 90% confidence (10% error rate) = Q10• 99% confidence (1% error rate) = Q20• 99.9% confidence (.1% error rate) = Q30• SAM encoding...
Bioinformatics tools developed for Oxford Nanopore data analysis !
By biogeek 2677 days ago Comments (2)One of the technical advantages of ONT data is the read length, which offers great prospects for genome assembly.List of cancer genomics research web resources !
By biogeek 2677 days agoMajor web resources for cancer genomics researchInstalling Perl environment on Linux
By biogeek 2678 days ago Comments (3)By using plenv, you can easily install and switch among different version of Perl. This will be installed under your home directory in~/.plenv.
Question: How to downgrade the Perl
Question: Alienomics error, how to fix it !
Question: What is the p-value?
Question: Unable to restart Apache !
bioinformatics workbook
By biogeek 1572 days agobioinformaticsworkbook.org - This books assumes that the reader has some knowledge of biology and basic understanding of the Unix command line. However, for the beginner, the appendix contains introductory material and tips/tricks for common bioinformatic problems, that is...pggb: the pangenome graph builder
By biogeek 1686 days agogithub.com - This pangenome graph construction pipeline renders a collection of sequences into a pangenome graph (in the variation graph model). Its goal is to build a graph that is locally directed and acyclic while preserving large-scale variation. Maintaining...VICUNA: a software tool that enables consensus assembly of ultra-deep sequence derived from diverse...
By biogeek 1706 days agowww.broadinstitute.org - VICUNA is a de novo assembly program targeting populations with high mutation rates. It creates a single linear representation of the mixed population on which intra-host variants can be mapped. For clinical samples rich in...Best Practices for Variant Calling with the GATK
By biogeek 1891 days agowww.broadinstitute.org - The presentations below were filmed during the March 2015 GATK Workshop, part of the BroadE Workshop series. At the time of this workshop, the current version of Broad’s Genome Analysis Toolkit (GATK) was version...
