Results for "Genome"

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  • MGRA: Breakpoint graphs and ancestral genome reconstructions

    MGRA (Multiple Genome Rearrangements and Ancestors) is a tool for reconstruction of ancestor genomes and evolutionary history of extant genomes. It takes as an input a set of genomes represented as sequences of genes (or synteny blocks) and produces such sequences for ancestral genomes at the in...

    Tags: MGRA, Breakpoint, graphs, ancestral, genome, reconstructions

    122 days ago

  • GOLD:Genomes Online Database

    GOLD:Genomes Online Database, is a World Wide Web resource for comprehensive access to information regarding genome and metagenome sequencing projects, and their associated metadata, around the world. https://gold.jgi.doe.gov/

    Tags: GOLD, Genomes, Online, Database, comprehensive, access, information, genome, metagenome, sequencing, projects, metadata

    121 days ago

  • DFAST: a flexible prokaryotic genome annotation pipeline for faster genome publication

    We developed a prokaryotic genome annotation pipeline, DFAST, that also supports genome submission to public sequence databases. DFAST was originally started as an on-line annotation server, and to date, over 7,000 jobs have been processed since its first launch in 2016. Here, we present a newly ...

    Tags: DFAST, flexible, prokaryotic, genome, annotation, pipeline, faster, genome, publication

    10 days ago

  • Genomicus: genome browser that enables users to navigate in genomes in several dimensions

    Genomicus is a genome browser that enables users to navigate in genomes in several dimensions: linearly along chromosome axes, transversaly across different species, and chronologicaly along evolutionary time. Once a query gene has been entered, it is displayed in its genomic context in parallel...

    Tags: Genomicus, genome, browser, enables, navigate, genomes, several, dimensions

    6 days ago

  • Swabs to Genomes: A Comprehensive Workflow

    The sequencing, assembly, and basic analysis of microbial genomes, once a painstaking and expensive undertaking, has become almost trivial for research labs with access to standard molecular biology and computational tools. However, there are a wide variety of options available for DNA library pr...

    Tags: Bioinformatics, Computational Biology, Workflow, Genome, Commands

    1202 days ago

  • Rosalind Bioinformatics problems !!!

    Rosalind is a platform for learning bioinformatics and programming through problem solving. Take a tour to get the hang of how Rosalind works. http://rosalind.info/problems/list-view/

    Tags: Bioinformatics, Computational Biology, NGS, Genome, RNA-Seq, Algorithms, Online, Rosalind

    1072 days ago

  • Vital-IT

    Vital-IT is a bioinformatics competence center that supports and collaborates with life scientists in Switzerland and beyond. The multi-disciplinary team provides expertise, training and maintains a high-performance computing (HPC) and storage infrastructure, so as to help develop, maintain and e...

    Tags: Bioinformatics, Computational biology, Genome, Server, Vital-IT, Switzerland

    1072 days ago

  • Google Genomics

    Explore genetic variation interactively. Compare entire cohorts in seconds with SQL-like queries. Compute transition/transversion ratios, genome-wide association, allelic frequency and more. Process big genomic data easily. Run batch analyses like principal component analysis and Hardy-W...

    Tags: Bioinformatics, Computational biology, Genome, Server, Google, Genomics, Cloud, USA

    1072 days ago

  • ShRec3D

    ShRec3D is a program that aims at reconstructing a genome 3D structure (b) from the sole knowledge of the contacts between different genomic regions (a) as determined by Hi-C (http://www.ncbi.nlm.nih.gov/pubmed/19815776). There are two options to run ShRec3D (on linuX only so far): the first one...

    Tags: Bioinformatics, Computational Biology, ShRec3D, 3D genome, Genome, Hi-C, Chromosome

    1065 days ago

  • seqloc 0.6

    The Bio.SeqLoc modules in seqloc are designed to represent positions and locations (ranges of positions) on sequences, particularly nucleotide sequences. My original motivation for writing these packages was handing the locations of genes in eukaryotic genomes. Handle sequence locations for bioi...

    Tags: Bioinformatics, Computational Biology, Education, Sequence, Seq, Genome, View

    1062 days ago