Points: 708
Shruti Paniwala
#HumanCellAtlas consortium present the #TabulaSapiens dataset. Provides a molecular definition of more than 400 cell types across 24 organs. Learn more: https:/
(1379 days ago)
Brief description:
A Bioinformatician
Location:
Mumbai
Interests:
Skills:
About me
I am bioinformatics research fellow in a ICMR laboratory.
" Sequencing costs have plummeted with the help of new medical instruments: almost every 6 months we see new instrument with higher throughput like BGI’s DNBSEQ-T7 at 60 genomes per day. At the world’s rate of sequencing, we’ll generate 20 ExaBytes of data by 2025 – more than Twitter, Youtube and astronomy combined. In fact, it would take all the CPUs in every cloud and more than 200 days to run genome analysis. "
Question: Any good bioinformatics suggestions !
Question: How to downgrade the Perl
Question: Alienomics error, how to fix it !
Question: What is the p-value?
- Shruti Paniwala published a blog post Understanding DUMP files from NCBI Taxonomy database !
- Shruti Paniwala posted a new ad in the ResearchLabs lsugenomics Lab
- Shruti Paniwala published a blog post SLURM Commands
- Shruti Paniwala bookmarked Human Complete Genome
- Shruti Paniwala published a blog post Finding a mimicry game for teaching on-line and mentioned general resources
- Shruti Paniwala published a blog post List of comparative genomics resources !
PerlOneLiner for Bioinformatician
Last updated 2972 days ago by Shruti PaniwalaFILE SPACING------------ # Double space a fileperl -pe '$\="\n"'perl -pe 'BEGIN { $\="\n" }'perl -pe '$_ .= "\n"'perl -pe 's/$/\n/'perl -nE 'say' # Double space a file, except the blank linesperl -pe '$_ .= "\n" unless /^$/'perl -pe '$_ .= "\n" if...
- By Shruti Paniwala 1379 days ago#HumanCellAtlas consortium present the #TabulaSapiens dataset. Provides a molecular definition of more than 400 cell types across 24 organs. Learn more: https:/
/ fcld.ly/ 9oala6q - By Shruti Paniwala 1775 days agoScientists has sequence 64 full #human #genomes, representing 25 different human populations from across the globe. https:/
/ science.sciencemag.org/ content/ 372/ 6537/ eabf7117 - By Shruti Paniwala 1834 days agoComputational Genomics with R http:/
/ compgenomr.github.io/ book/ #R #Computational #Genomics #Book #Tutorial
The new corona variant has 23 mutations in all, which is unusually huge !
By Shruti Paniwala 1899 days agoThe new SARS-CoV-2 version, B.1.1.7, which was first seen in the third week of September in Kent and Greater London, has since spread to other locations in the UK.Ramalingaswami Re-entry Fellowship
By Shruti Paniwala 1942 days agoRamalingaswami Re-entry #Fellowship 2020-2021 for Indian NationalsDBT BIOTECHNOLOGY ELIGIBILITY TEST (BET) 2020
By Shruti Paniwala 2022 days agoDBT-Junior Research Fellowship (DBT-JRF) in Biotechnology (2020)ENCODE3: A collection of research articles and related content describing the Encyclopedia of DNA...
By Shruti Paniwala 2036 days agoENCODE 3 A collection of research articles and related content describing the Encyclopedia of DNA Elements, its datasets and tools.
Understanding DUMP files from NCBI Taxonomy database !
By Shruti Paniwala 1330 days agoTaxonomy database !Finding a mimicry game for teaching on-line and mentioned general resources
By Shruti Paniwala 1347 days agofinding a mimicry game for teaching on-line and mentioned general resourcesOnline resources on must-read papers in evolutionary biology, for a literature club
By Shruti Paniwala 1347 days agoonline resources on must-read papers in evolutionary biology, for a literature club
Human Complete Genome
By Shruti Paniwala 1339 days agowww.science.org - Telomere-to-telomere consortium We have sequenced the CHM13hTERT human cell line with a number of technologies. Human genomic DNA was extracted from the cultured cell line. As the DNA is native, modified bases will be preserved. The data includes...JASMINE: Jointly Accurate Sv Merging with Intersample Network Edges
By Shruti Paniwala 1342 days agogithub.com - This tool is used to merge structural variants (SVs) across samples. Each sample has a number of SV calls, consisting of position information (chromosome, start, end, length), type and strand information, and a number of other values. Jasmine...ChEMBL
By Shruti Paniwala 1352 days agowww.ebi.ac.uk - ChEMBL is a manually curated database of bioactive molecules with drug-like properties. It brings together chemical, bioactivity and genomic data to aid the translation of genomic information into effective new drugs.Syri compares alignments between two chromosome-level assemblies and identifies synteny and...
By Shruti Paniwala 1374 days agogithub.com - Syri compares alignments between two chromosome-level assemblies and identifies synteny and structural rearrangements.
