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• • Rahul Nayak@rahul

  

  The BLAST parser http://kirill-kryukov.com/study/tools/blast-parser/ #BLAST #Parser #Genome #Match #Sequence #Similarity

  Tags: BLAST, Parser, Genome, Match, Sequence, Similarity

  3133 days ago

• • Archana Malhotra@archana

  

  LAST

  LAST can: Handle big sequence data, e.g: Compare two vertebrate genomes Align billions of DNA reads to a genome Indicate the reliability of each aligned column. Use sequence quality data properly. Compare DNA to proteins, with frameshifts. Compare PSSMs to sequences Calculate th...

  Tags: LAST, Bioinformatics, Mapping, Match, Align, Sequences, Compare

  2970 days ago

• • Jit@jit.aber

  

  E-MEM: Efficient computation of Maximal Exact Matches

  E-MEM is a C++/OpenMP program designed to efficiently compute MEMs between large genomes. See the README file for instructions on how to use E-MEM. E-MEM source code The source code can be downloaded here. If you use E-MEM, please cite: N. Khiste, L. Ilie, E-MEM: Efficient comp...

  Tags: Bioinformatics, Analysis, Match, Genome, E-MEM

  2689 days ago