Tags: microbes, bacteria, ocean, sediments, viruses, rock, extremophilic microbes, sequencing, metagenomics
3888 days ago
Tags: bioinformatics, genomics, metagenomics, phylogeny, gene expression, cancer, marine genomics, ENCODE, conference
3888 days ago
Tags: metagenomics, metatranscriptomics, genomics, reads, 16S rRNA, microbes, microbiology, ecogenomics, ecology, microbiome
3695 days ago
Metagenomics role in antibiotic resistance
Related latest article: http://www.nature.com/nature/journal/v509/n7502/pdf/nature13377.pdfTags: metagenomics, antibiotics resistant, sequencing
3616 days ago
Tags: bioinformatics, connectome, metagenomics
3237 days ago
Fancy Oneliner for Bioinformatics !!
This webpage lists some of the one-liners that we frequently use in metagenomic analyses. You can click on the following links to browse through different topics. You can copy/paste the commands as they are in your terminal screen, provided you follow the same naming conventions and folder struct...Tags: Bioinformatics, Analysis, Visualization, SAM, BAM, Oneliner, NGS, metagenomics
2850 days ago
Tags: MEGAHIT, ultra-fast, single-node, solution, large, complex, metagenomics, assembly, succinct, de Bruijn, graph
1991 days ago
Simka and SimkaMin are comparative metagenomics method dedicated to NGS datasets
Simka is a de novo comparative metagenomics tool. Simka represents each dataset as a k-mer spectrum and compute several classical ecological distances between them. Developper: Gaëtan Benoit, PhD, former member of the Genscale team at Inria. Contact: claire dot lemaitre at i...Tags: Simka, SimkaMin, comparative, metagenomics, method, dedicated, NGS, datasets
1756 days ago
sunbeam: A robust, extensible metagenomics pipeline
Sunbeam is a pipeline written in snakemake that simplifies and automates many of the steps in metagenomic sequencing analysis. It uses conda to manage dependencies, so it doesn't have pre-existing dependencies or admin privileges, and can be deployed on most Linux workstations...Tags: sunbeam, robust, extensible, metagenomics, pipeline
1409 days ago