Results for "ONT"
Bio-Scripts
Extract fasta sequence with Ids with Bash script
#!/bin/bash while IFS='' read -r line || [[ -n "$line" ]]; do echo "Text read from file: $line" samtools faidx ONT.fasta $line > $line.faa done < "$1"2345 days ago
Long reads mapper bash script !
...r.sh minimap2 ref.fa reads.fa/fq 48 ont echo -e "This is a bash scri...r.sh minimap2 ref.fa reads.fa/fq 48 ont" exit 1 fi fileName=...dex $refFasta if [ $readsType == "ont" ]; then $lamsaLoc aln...o "NGMLR:Please specify reads type: ont, pacbio" fi elif [ $toolNa...2113 days ago
- Map them agaist reference avaga genome using following codes git clone https://github.com/lh3/bwa.git cd bwa; make bwa index ref.fa bwa mem -x pacbio ref.fa pacbio.fq > aln.sam bwa mem -x ont2d ref.fa ont-2D.fq > aln.sam
1716 days ago
