Bioinformatics algorithms tutorials
Useful bioinformatics tutorial, such as De Bruijn Graphs for NGS AssemblyAlgorithms for PacBio ReadsSoftware and Hardware Concepts for BioinformaticsFinding us in Homolog.us (Search...3594 days ago
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
...d also presents a significant improvement over the state-of-the-art for PacBio read mappers. GraphMap was a...ange of read lengths and error profiles, including: Illumina, PacBio and Oxford Nanopore...3216 days ago
Scaffolding of a bacterial genome using MinION nanopore sequencing
...ontigs cannot be easily resolved. A new generation of sequencers offering substantially longer reads is emerging, notably the Pacific Biosciences (PacBio) RS II system and the MinION...3216 days ago
CANU: Assembling Large Genomes with Single-Molecule Sequencing and Locality Sensitive Hashing.
Canu is a fork of the Celera Assembler designed for high-noise single-molecule sequencing (such as the PacBio RSII or Oxford Nanopore MinION). The software is currently alph...2905 days ago
2618 days ago
OPERA : Optimal Paired-End Read Assembler
...latest release contains the wrapper script OPERA-long-read that enables scaffolding with long-reads from third-generation sequencing technologies (PacBio or Oxford Nanopore). The manu...2786 days ago
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PBSuite: Software for Long-Read Sequencing Data from PacBio
...w.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0047768PBJelly is a highly automated pipeline that aligns long sequencing reads (such as PacBio RS reads or long 454 reads in...2615 days ago
Pacbio Long Reads Compatible Software and Tools
...he following software packages are known to be compatible with PacBio® data, in addition to PacBio's own SMRT® Analysis suit...mmercial software. Know of any other open source software for PacBio data? Email us. Softwar...2599 days ago