Results for "Reads"

Tags

  • Metagenomics

    Metagenomics

    Metagenomics is the study of genetic material from environmental samples to characterize and identify the millions of microbes from these samples. Example: Gut microbiome, soil sample, water, etc. More information: http://www.nature.com/nrmicro/focus/metagenomics/index.html http://www.ploscom...

    Tags: metagenomics, metatranscriptomics, genomics, reads, 16S rRNA, microbes, microbiology, ecogenomics, ecology, microbiome

    1290 days ago

  • #Mapping #sequencing #reads to a #reference #genome with #Bowtie2: a step-by-step guide https://insidedna.me/tutorials/view/how-to-use-bowtie2-read-mapping

    Tags: Mapping, sequencing, reads, reference, genome, Bowtie2

    561 days ago

  • GraphMap - A highly sensitive and accurate mapper for long, error-prone reads

    GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/ncomms11307.htmlFeatures    Mapping position agnostic to alignment parameters.    Consistently very high sensitivity and precision ...

    Tags: GraphMap, sensitive, accurate, mapper, long, error-prone, reads

    110 days ago

  • #Sickle ( https://github.com/najoshi/sickle ) to #trim #reads using a 20-Phred quality threshold

    Tags: Sickle, trim, reads

    77 days ago

  • #Filter out #reads with #size to discard reads containing many Ns. BBNorm ( https://sourceforge.net/projects/bbmap/ )

    Tags: Filter, reads, size

    77 days ago

  • Dealing with #paired end NGS #reads https://davetang.org/muse/2014/07/24/getting-started-paired-end-reads/

    Tags: paired, reads

    35 days ago

  • Samtools fields explained !

    From the SAM format specification, the fields are: Column Field Type Regexp/Range Brief description 1 QNAME String [!-?A-~]{1,255} Query template NAME 2 FLAG Int [0,216-1] bitwise FLAG 3 RNAME String \*|[!-()+-<>-~][!-~]* Reference sequence NAME 4...

    Tags: samtools, flags, fields, NGS, assembly, reads

    35 days ago

  • misFinder: identify mis-assemblies in an unbiased manner using reference and paired-end reads

    We present misFinder, a tool that aims to identify the assembly errors with high accuracy in an unbiased way and correct these errors at their mis-assembled positions to improve the assembly accuracy for downstream analysis. It combines the information of reference (or close related reference) ...

    Tags: misFinder, Identify, mis-assemblies, unbiased, manner, reference, paired-end, reads

    28 days ago

  • Assemble short reads http://ged.msu.edu/angus/tutorials/short-read-assembly.html #Tutorial #ABySS #Bacteria #Reads #Assembly #Genomics #NGS

    Tags: Tutorial, ABySS, Bacteria, Reads, Assembly, Genomics, NGS

    1207 days ago

  • Reference-free Prediction of Rearrangement Breakpoint Reads http://bioinformatics.oxfordjournals.org/content/early/2014/05/28/bioinformatics.btu360.short #Reference #Breakpoint #Reads #Rearrangement

    Tags: Reference, Breakpoint, Reads, Rearrangement

    1106 days ago