BioStar published a blog post Bioinformatics: The Bridge Between Curiosity and Discovery- BioStar published a blog post Predicting Pathogen Virulence Using Bioinformatics Tools
Evaluation of genome assembly software based on long reads
By BioStar 2589 days agoTGS technologies have been used to produce highly accurate de novo assemblies of hundreds of microbial genomes and highly contiguous reconstructions of many dozens of plant and animal genomes, enabling new insights into evolution and sequence...
Mpox Public Health Emergency of International Concern
By BioStar 567 days agoThe World Health Organization Health Organization (WHO) declared the mpox outbreak a Public Health Emergency of International ConcernNCBI Datasets pages
By BioStar 967 days agoAssembly and Genome record pages now redirect to new NCBI Datasets pages.SPADes team announce new version SPADes v3.15
By BioStar 1875 days agoNew SPAdes 3.15.0.0. announced by the SPADes teamThe pandemic has worsened the plight of postdoctoral researchers !
By BioStar 2001 days agoThe pandemic has worsened the plight of postdoctoral researchers. Funders need to be offering more than moral support.
Jit
5557 points
5557 points
Jitendra Narayan
2550 points
2550 points
Rahul Nayak
2300 points
2300 points
Neel
1639 points
1639 points
BioStar
1266 points
1266 points
Question: Any good bioinformatics suggestions !
Question: How to downgrade the Perl
Question: Alienomics error, how to fix it !
Question: What is the p-value?
- By BioStar 774 days agoDelete all the headers from multifasta file $ awk 'BEGIN {print ">"ARGV[1]};!/^>/{print}' test.fa #fasta #delete #header #multifasta
- By BioStar 778 days agoData resource for metagenomics benchmarking https:/
/ ftp.ebi.ac.uk/ pub/ databases/ metagenomics/ taxon_benchmarking/ #Tools #Metagenome - By BioStar 828 days ago
Important Bioinformatics Tools !
Last updated 584 days ago by BioStar1. Ktrim: An extra-fast, accurate adapter trimmer for sequencing data. It processes FASTQ files from multiple lanes with minimal mismatching and over-trimming of adapters.2. BWA MEM: A reliable alignment tool (particularly for mapping ALT contigs...-
Bioinformatics tools for genome assembly !
Last updated 955 days ago by BioStarThere are numerous genome assembly tools available, each with its strengths and weaknesses. Here is a list of some widely used genome assembly tools as of my last update in September 2021: SPAdes: An assembler specifically designed for... -
Tools for Geospatial data analysis !
Last updated 1080 days ago by BioStarGeospatial data is becoming increasingly important in many fields, including urban planning, environmental science, public health, and more. These tools can help you work with data from a variety of sources, including satellite imagery, GPS data,... -
Type of SSR
Last updated 1093 days ago by BioStarTypes of SSRs (simple sequence repeats), SSRs are short DNA sequences consisting of a tandem repeat of a few nucleotides, typically 2-6 nucleotides in length. There are different types of SSRs based on the length and pattern of the repeated...
Perl script to calculate GC content !
By BioStar 766 days ago
Let BioStar know what you think!
Genomic Basis of Evolutionary Innovations (GEvol)
By BioStar 89 days agog-evol.uni-muenster.de - The Priority Programme (SPP 2349) funded by German Science Foundation (DFG) started 2022: „Genomic Basis of Evolutionary Innovations (GEvol)“ GEvol is unique as it will use, for the first time, a large taxonomic group to focus on one...GFAffix : Identifies walk-preserving shared affixes in variation graphs and collapses them into a...
By BioStar 190 days agogithub.com - GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.AlfaPang: alignment free algorithm for pangenome graph construction
By BioStar 190 days agogithub.com - AlfaPang constructs variation graphs, leveraging its alignment-free and reference-free approach, based solely on intrinsic sequence properties. This design allows AlfaPang's runtime and memory usage to scale linearly with the size of input...Firecrawl: The Web Data API for AI - Turn entire websites into LLM-ready markdown or structured data
By BioStar 190 days agogithub.com - Firecrawl is an API service that takes a URL, crawls it, and converts it into clean markdown or structured data. We crawl all accessible subpages and give you clean data for each. No sitemap required. Check out our documentation. Pst....
Bioinformatics: The Bridge Between Curiosity and Discovery
By BioStar 102 days agoIn the sprawling universe of modern science, bioinformatics stands as one of the most transformative and empowering fields of our time. It is where biology meets computation, where data becomes meaning, and where curiosity becomes discovery. If...Predicting Pathogen Virulence Using Bioinformatics Tools
By BioStar 121 days agoIn the genomic era, the ability to predict the virulence potential of pathogens has become an indispensable part of infectious disease research. With the exponential growth of microbial genome data, bioinformatics tools now enable scientists to...HiBC: Human Intestinal Bacteria Collection
By BioStar 303 days agoThe human gut is home to trillions of microorganisms, forming one of the most complex and dynamic microbial ecosystems known to science. The Human Intestinal Bacteria Collection (HiBC) is a pioneering initiative aimed at cataloging, preserving,...Kallisto vs Salmon: Choosing the Right Tool for RNA-Seq Quantification
By BioStar 307 days agoIn the world of transcriptomics, quantifying gene and transcript expression accurately and efficiently is crucial. With the explosion of RNA-Seq data, researchers have turned to fast, alignment-free tools that streamline the quantification process...
