Results for "SV"
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...ework for Structural Variant Discovery." Genome Biology 15 (6): R84. doi:10.1186/gb-2014-15-6-r84. More at https://github.com/arq5x/lumpy-sv2801 days ago
- ...without requiring round-trips to servers and without plugins. GoJS normally runs completely in the browser, rendering to an HTML5 Canvas element or SVG without any server-side requ...
2712 days ago
- PRISM is a software for split read (reads which span across a structrual variant -- SV ) mapping and SV calling from the mapping result. PRISM is able to detect small insertions and abitrar...
2694 days ago
- ...ple mappings per defined segment of the query. We show that YAHA detects more breakpoints in less time than BWA-SW across all SV classes, and especially excels at complex SVs comprising multiple breakpoi...
2653 days ago
Pacbio Long Reads Compatible Software and Tools
The following software packages are known to be compatible with PacBio® data, in addition to PacBio's own SMRT® Analysis suite. All packages are believed to b...2599 days ago
- ...cs derived from subset or element attributes. To begin, input your data using one of the three input styles. "File" takes a correctly formatted.csv file. "List" takes up to 6 d...
2569 days ago
A Post-assembly genome-improvement toolkit (PAGIT) to obtain annotated genomes from contigs
PAGIT addresses the need for software to generate high quality draft genomes. It is based on a series of programs that we developed: ABACAS, that is able to contigua...2541 days ago
Genetic-mapper: SVG Genetic Map Drawer
...lication-ready vectorial genetic/linkage map in Scalable Vector Graphics (SVG) format. The resulting file...s (LOD score) can be provided. Any extra parameter will be ignored. map.tsv ID<tab>LG<tab>...2504 days ago
- ...bsp;and TRF output, SAM/BAM files, VCF-encoded SNPs, tab-delimited files Outputs publication-ready figures in the SVG (Scalable Vector Graphi...
2497 days ago
slacTree: SVG Large Annotated Circular Tree drawing
...1000 taxa with custom annotations Because it is a single Perl script with very few dependencies, it is easy to run, and easy to further customize SVG is used because it is a scal...2489 days ago
